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LINC01886 (long intergenic non-protein coding RNA 1886)

Identity

Other alias-
HGNC (Hugo) LINC01886
LocusID (NCBI) 105373537
Atlas_Id 79111
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 107529419 and ends at 107556496 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01886   52705
Cards
Entrez_Gene (NCBI)LINC01886  105373537  long intergenic non-protein coding RNA 1886
Aliases
GeneCards (Weizmann)LINC01886
Ensembl hg19 (Hinxton)ENSG00000224568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224568 [Gene_View]  chr2:107529419-107556496 [Contig_View]  LINC01886 [Vega]
ICGC DataPortalENSG00000224568
TCGA cBioPortalLINC01886
AceView (NCBI)LINC01886
Genatlas (Paris)LINC01886
WikiGenes105373537
SOURCE (Princeton)LINC01886
Genetics Home Reference (NIH)LINC01886
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01886  -     chr2:107529419-107556496 +  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01886  -     2q12.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01886 - 2q12.3 [CytoView hg19]  LINC01886 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBILINC01886 [Mapview hg19]  LINC01886 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01886
Alternative Splicing GalleryENSG00000224568
Gene ExpressionLINC01886 [ NCBI-GEO ]   LINC01886 [ EBI - ARRAY_EXPRESS ]   LINC01886 [ SEEK ]   LINC01886 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01886 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373537
GTEX Portal (Tissue expression)LINC01886
Human Protein AtlasENSG00000224568-LINC01886 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01886
DMDM Disease mutations105373537
Blocks (Seattle)LINC01886
Human Protein Atlas [tissue]ENSG00000224568-LINC01886 [tissue]
Protein Interaction databases
FunCoupENSG00000224568
BioGRIDLINC01886
STRING (EMBL)LINC01886
ZODIACLINC01886
Ontologies - Pathways
Huge Navigator LINC01886 [HugePedia]
snp3D : Map Gene to Disease105373537
BioCentury BCIQLINC01886
ClinGenLINC01886
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373537
Clinical trialLINC01886
Miscellaneous
canSAR (ICR)LINC01886 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01886
EVEXLINC01886
GoPubMedLINC01886
iHOPLINC01886
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:15 CET 2017

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