Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01909 (long intergenic non-protein coding RNA 1909)

Identity

Other alias-
HGNC (Hugo) LINC01909
LocusID (NCBI) 101927481
Atlas_Id 79382
Location 18q22.2  [Link to chromosome band 18q22]
Location_base_pair Starts at 70335439 and ends at 70352459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01909   52728
Cards
Entrez_Gene (NCBI)LINC01909  101927481  long intergenic non-protein coding RNA 1909
Aliases
GeneCards (Weizmann)LINC01909
Ensembl hg19 (Hinxton)ENSG00000266258 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266258 [Gene_View]  chr18:70335439-70352459 [Contig_View]  LINC01909 [Vega]
ICGC DataPortalENSG00000266258
TCGA cBioPortalLINC01909
AceView (NCBI)LINC01909
Genatlas (Paris)LINC01909
WikiGenes101927481
SOURCE (Princeton)LINC01909
Genetics Home Reference (NIH)LINC01909
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01909  -     chr18:70335439-70352459 +  18q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01909  -     18q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01909 - 18q22.2 [CytoView hg19]  LINC01909 - 18q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC01909 [Mapview hg19]  LINC01909 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AV726231
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01909
Cluster EST : UnigeneHs.633706 [ NCBI ]
CGAP (NCI)Hs.633706
Alternative Splicing GalleryENSG00000266258
Gene ExpressionLINC01909 [ NCBI-GEO ]   LINC01909 [ EBI - ARRAY_EXPRESS ]   LINC01909 [ SEEK ]   LINC01909 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01909 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927481
GTEX Portal (Tissue expression)LINC01909
Human Protein AtlasENSG00000266258-LINC01909 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01909
DMDM Disease mutations101927481
Blocks (Seattle)LINC01909
Human Protein Atlas [tissue]ENSG00000266258-LINC01909 [tissue]
Protein Interaction databases
FunCoupENSG00000266258
BioGRIDLINC01909
STRING (EMBL)LINC01909
ZODIACLINC01909
Ontologies - Pathways
Huge Navigator LINC01909 [HugePedia]
snp3D : Map Gene to Disease101927481
BioCentury BCIQLINC01909
ClinGenLINC01909
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927481
Clinical trialLINC01909
Miscellaneous
canSAR (ICR)LINC01909 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01909
EVEXLINC01909
GoPubMedLINC01909
iHOPLINC01909
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:40 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.