Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01917 (long intergenic non-protein coding RNA 1917)

Identity

Other alias-
HGNC (Hugo) LINC01917
LocusID (NCBI) 101928167
Atlas_Id 80187
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 53579623 and ends at 53581059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01917   52736
Cards
Entrez_Gene (NCBI)LINC01917  101928167  long intergenic non-protein coding RNA 1917
Aliases
GeneCards (Weizmann)LINC01917
Ensembl hg19 (Hinxton)ENSG00000260433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260433 [Gene_View]  chr18:53579623-53581059 [Contig_View]  LINC01917 [Vega]
ICGC DataPortalENSG00000260433
TCGA cBioPortalLINC01917
AceView (NCBI)LINC01917
Genatlas (Paris)LINC01917
WikiGenes101928167
SOURCE (Princeton)LINC01917
Genetics Home Reference (NIH)LINC01917
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01917  -     chr18:53579623-53581059 -  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01917  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01917 - 18q21.2 [CytoView hg19]  LINC01917 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01917 [Mapview hg19]  LINC01917 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034434 BC036634
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01917
Cluster EST : UnigeneHs.382012 [ NCBI ]
CGAP (NCI)Hs.382012
Alternative Splicing GalleryENSG00000260433
Gene ExpressionLINC01917 [ NCBI-GEO ]   LINC01917 [ EBI - ARRAY_EXPRESS ]   LINC01917 [ SEEK ]   LINC01917 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01917 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928167
GTEX Portal (Tissue expression)LINC01917
Human Protein AtlasENSG00000260433-LINC01917 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01917
DMDM Disease mutations101928167
Blocks (Seattle)LINC01917
Human Protein Atlas [tissue]ENSG00000260433-LINC01917 [tissue]
Protein Interaction databases
FunCoupENSG00000260433
BioGRIDLINC01917
STRING (EMBL)LINC01917
ZODIACLINC01917
Ontologies - Pathways
Huge Navigator LINC01917 [HugePedia]
snp3D : Map Gene to Disease101928167
BioCentury BCIQLINC01917
ClinGenLINC01917
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928167
Clinical trialLINC01917
Miscellaneous
canSAR (ICR)LINC01917 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01917
EVEXLINC01917
GoPubMedLINC01917
iHOPLINC01917
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.