Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01931 (long intergenic non-protein coding RNA 1931)

Identity

Other alias-
HGNC (Hugo) LINC01931
LocusID (NCBI) 150596
Atlas_Id 79860
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 149767506 and ends at 149859191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01931   52743
Cards
Entrez_Gene (NCBI)LINC01931  150596  long intergenic non-protein coding RNA 1931
Aliases
GeneCards (Weizmann)LINC01931
Ensembl hg19 (Hinxton)ENSG00000162947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162947 [Gene_View]  chr2:149767506-149859191 [Contig_View]  LINC01931 [Vega]
ICGC DataPortalENSG00000162947
TCGA cBioPortalLINC01931
AceView (NCBI)LINC01931
Genatlas (Paris)LINC01931
WikiGenes150596
SOURCE (Princeton)LINC01931
Genetics Home Reference (NIH)LINC01931
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01931  -     chr2:149767506-149859191 -  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01931  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01931 - 2q23.3 [CytoView hg19]  LINC01931 - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC01931 [Mapview hg19]  LINC01931 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057517
RefSeq transcript (Entrez)NM_153041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01931
Cluster EST : UnigeneHs.470217 [ NCBI ]
CGAP (NCI)Hs.470217
Alternative Splicing GalleryENSG00000162947
Gene ExpressionLINC01931 [ NCBI-GEO ]   LINC01931 [ EBI - ARRAY_EXPRESS ]   LINC01931 [ SEEK ]   LINC01931 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01931 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)150596
GTEX Portal (Tissue expression)LINC01931
Human Protein AtlasENSG00000162947-LINC01931 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01931
DMDM Disease mutations150596
Blocks (Seattle)LINC01931
Human Protein Atlas [tissue]ENSG00000162947-LINC01931 [tissue]
IPIIPI00065436   
Protein Interaction databases
FunCoupENSG00000162947
BioGRIDLINC01931
STRING (EMBL)LINC01931
ZODIACLINC01931
Ontologies - Pathways
Huge Navigator LINC01931 [HugePedia]
snp3D : Map Gene to Disease150596
BioCentury BCIQLINC01931
ClinGenLINC01931
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150596
Clinical trialLINC01931
Miscellaneous
canSAR (ICR)LINC01931 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01931
EVEXLINC01931
GoPubMedLINC01931
iHOPLINC01931
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.