Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01933 (long intergenic non-protein coding RNA 1933)

Identity

Other aliasCTB-12O2.1
HGNC (Hugo) LINC01933
LocusID (NCBI) 101927115
Atlas_Id 79144
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151958898 and ends at 152270449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01933   52756
Cards
Entrez_Gene (NCBI)LINC01933  101927115  long intergenic non-protein coding RNA 1933
AliasesCTB-12O2.1
GeneCards (Weizmann)LINC01933
Ensembl hg19 (Hinxton)ENSG00000254226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254226 [Gene_View]  ENSG00000254226 [Sequence]  chr5:151958898-152270449 [Contig_View]  LINC01933 [Vega]
ICGC DataPortalENSG00000254226
TCGA cBioPortalLINC01933
AceView (NCBI)LINC01933
Genatlas (Paris)LINC01933
WikiGenes101927115
SOURCE (Princeton)LINC01933
Genetics Home Reference (NIH)LINC01933
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01933  -     chr5:151958898-152270449 +  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01933  -     5q33.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01933 - 5q33.1 [CytoView hg19]  LINC01933 - 5q33.1 [CytoView hg38]
ImmunoBaseENSG00000254226
Mapping of homologs : NCBILINC01933 [Mapview hg19]  LINC01933 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001582 BE857938 BX113582 W74779
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01933
Cluster EST : UnigeneHs.549665 [ NCBI ]
CGAP (NCI)Hs.549665
Alternative Splicing GalleryENSG00000254226
Gene ExpressionLINC01933 [ NCBI-GEO ]   LINC01933 [ EBI - ARRAY_EXPRESS ]   LINC01933 [ SEEK ]   LINC01933 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01933 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927115
GTEX Portal (Tissue expression)LINC01933
Human Protein AtlasENSG00000254226-LINC01933 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01933
DMDM Disease mutations101927115
Blocks (Seattle)LINC01933
Human Protein Atlas [tissue]ENSG00000254226-LINC01933 [tissue]
Protein Interaction databases
FunCoupENSG00000254226
BioGRIDLINC01933
STRING (EMBL)LINC01933
ZODIACLINC01933
Ontologies - Pathways
Huge Navigator LINC01933 [HugePedia]
snp3D : Map Gene to Disease101927115
BioCentury BCIQLINC01933
ClinGenLINC01933
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927115
Clinical trialLINC01933
Miscellaneous
canSAR (ICR)LINC01933 (select the gene name)
DataMed IndexLINC01933
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01933
EVEXLINC01933
GoPubMedLINC01933
iHOPLINC01933
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:25:10 CEST 2019

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