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LINC01939 (long intergenic non-protein coding RNA 1939)

Identity

Other alias-
HGNC (Hugo) LINC01939
LocusID (NCBI) 101060385
Atlas_Id 80254
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 900216 and ends at 905451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01939   52762
Cards
Entrez_Gene (NCBI)LINC01939  101060385  long intergenic non-protein coding RNA 1939
Aliases
GeneCards (Weizmann)LINC01939
Ensembl hg19 (Hinxton)ENSG00000228799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228799 [Gene_View]  chr2:900216-905451 [Contig_View]  LINC01939 [Vega]
ICGC DataPortalENSG00000228799
TCGA cBioPortalLINC01939
AceView (NCBI)LINC01939
Genatlas (Paris)LINC01939
WikiGenes101060385
SOURCE (Princeton)LINC01939
Genetics Home Reference (NIH)LINC01939
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01939  -     chr2:900216-905451 -  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01939  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01939 - 2p25.3 [CytoView hg19]  LINC01939 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01939 [Mapview hg19]  LINC01939 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX115042
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01939
Cluster EST : UnigeneHs.385965 [ NCBI ]
CGAP (NCI)Hs.385965
Alternative Splicing GalleryENSG00000228799
Gene ExpressionLINC01939 [ NCBI-GEO ]   LINC01939 [ EBI - ARRAY_EXPRESS ]   LINC01939 [ SEEK ]   LINC01939 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01939 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101060385
GTEX Portal (Tissue expression)LINC01939
Human Protein AtlasENSG00000228799-LINC01939 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01939
DMDM Disease mutations101060385
Blocks (Seattle)LINC01939
Human Protein Atlas [tissue]ENSG00000228799-LINC01939 [tissue]
Protein Interaction databases
FunCoupENSG00000228799
BioGRIDLINC01939
STRING (EMBL)LINC01939
ZODIACLINC01939
Ontologies - Pathways
Huge Navigator LINC01939 [HugePedia]
snp3D : Map Gene to Disease101060385
BioCentury BCIQLINC01939
ClinGenLINC01939
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060385
Clinical trialLINC01939
Miscellaneous
canSAR (ICR)LINC01939 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01939
EVEXLINC01939
GoPubMedLINC01939
iHOPLINC01939
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:18 CET 2017

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