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LINC01940 (long intergenic non-protein coding RNA 1940)

Identity

Other alias-
HGNC (Hugo) LINC01940
LocusID (NCBI) 401039
Atlas_Id 79972
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 238919302 and ends at 238926269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01940   52763
Cards
Entrez_Gene (NCBI)LINC01940  401039  long intergenic non-protein coding RNA 1940
Aliases
GeneCards (Weizmann)LINC01940
Ensembl hg19 (Hinxton)ENSG00000227744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227744 [Gene_View]  chr2:238919302-238926269 [Contig_View]  LINC01940 [Vega]
ICGC DataPortalENSG00000227744
TCGA cBioPortalLINC01940
AceView (NCBI)LINC01940
Genatlas (Paris)LINC01940
WikiGenes401039
SOURCE (Princeton)LINC01940
Genetics Home Reference (NIH)LINC01940
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01940  -     chr2:238919302-238926269 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01940  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01940 - 2q37.3 [CytoView hg19]  LINC01940 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBILINC01940 [Mapview hg19]  LINC01940 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125867
RefSeq transcript (Entrez)NM_001001698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01940
Cluster EST : UnigeneHs.516791 [ NCBI ]
CGAP (NCI)Hs.516791
Alternative Splicing GalleryENSG00000227744
Gene ExpressionLINC01940 [ NCBI-GEO ]   LINC01940 [ EBI - ARRAY_EXPRESS ]   LINC01940 [ SEEK ]   LINC01940 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01940 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401039
GTEX Portal (Tissue expression)LINC01940
Human Protein AtlasENSG00000227744-LINC01940 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01940
DMDM Disease mutations401039
Blocks (Seattle)LINC01940
Human Protein Atlas [tissue]ENSG00000227744-LINC01940 [tissue]
IPIIPI00419021   
Protein Interaction databases
FunCoupENSG00000227744
BioGRIDLINC01940
STRING (EMBL)LINC01940
ZODIACLINC01940
Ontologies - Pathways
Huge Navigator LINC01940 [HugePedia]
snp3D : Map Gene to Disease401039
BioCentury BCIQLINC01940
ClinGenLINC01940
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401039
Clinical trialLINC01940
Miscellaneous
canSAR (ICR)LINC01940 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01940
EVEXLINC01940
GoPubMedLINC01940
iHOPLINC01940
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:18 CET 2017

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