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LINC01942 (long intergenic non-protein coding RNA 1942)

Identity

Other alias-
HGNC (Hugo) LINC01942
LocusID (NCBI) 105377736
Atlas_Id 78932
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173689459 and ends at 173705849 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01942   52766
Cards
Entrez_Gene (NCBI)LINC01942  105377736  long intergenic non-protein coding RNA 1942
Aliases
GeneCards (Weizmann)LINC01942
Ensembl hg19 (Hinxton)ENSG00000253428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253428 [Gene_View]  ENSG00000253428 [Sequence]  chr5:173689459-173705849 [Contig_View]  LINC01942 [Vega]
ICGC DataPortalENSG00000253428
TCGA cBioPortalLINC01942
AceView (NCBI)LINC01942
Genatlas (Paris)LINC01942
WikiGenes105377736
SOURCE (Princeton)LINC01942
Genetics Home Reference (NIH)LINC01942
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01942  -     chr5:173689459-173705849 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01942  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01942 - 5q35.2 [CytoView hg19]  LINC01942 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBILINC01942 [Mapview hg19]  LINC01942 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA422218
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01942
Cluster EST : UnigeneHs.582570 [ NCBI ]
CGAP (NCI)Hs.582570
Alternative Splicing GalleryENSG00000253428
Gene ExpressionLINC01942 [ NCBI-GEO ]   LINC01942 [ EBI - ARRAY_EXPRESS ]   LINC01942 [ SEEK ]   LINC01942 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01942 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377736
GTEX Portal (Tissue expression)LINC01942
Human Protein AtlasENSG00000253428-LINC01942 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01942
DMDM Disease mutations105377736
Blocks (Seattle)LINC01942
Human Protein Atlas [tissue]ENSG00000253428-LINC01942 [tissue]
Protein Interaction databases
FunCoupENSG00000253428
BioGRIDLINC01942
STRING (EMBL)LINC01942
ZODIACLINC01942
Ontologies - Pathways
Huge Navigator LINC01942 [HugePedia]
snp3D : Map Gene to Disease105377736
BioCentury BCIQLINC01942
ClinGenLINC01942
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377736
Clinical trialLINC01942
Miscellaneous
canSAR (ICR)LINC01942 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01942
EVEXLINC01942
GoPubMedLINC01942
iHOPLINC01942
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:29 CEST 2018

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