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LINC01945 (long intergenic non-protein coding RNA 1945)

Identity

Other alias-
HGNC (Hugo) LINC01945
LocusID (NCBI) 101928067
Atlas_Id 79112
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 131983786 and ends at 132037900 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01945   52769
Cards
Entrez_Gene (NCBI)LINC01945  101928067  long intergenic non-protein coding RNA 1945
Aliases
GeneCards (Weizmann)LINC01945
Ensembl hg19 (Hinxton)ENSG00000236485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236485 [Gene_View]  chr2:131983786-132037900 [Contig_View]  LINC01945 [Vega]
ICGC DataPortalENSG00000236485
TCGA cBioPortalLINC01945
AceView (NCBI)LINC01945
Genatlas (Paris)LINC01945
WikiGenes101928067
SOURCE (Princeton)LINC01945
Genetics Home Reference (NIH)LINC01945
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01945  -     chr2:131983786-132037900 -  2q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01945  -     2q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01945 - 2q21.2 [CytoView hg19]  LINC01945 - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01945 [Mapview hg19]  LINC01945 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01945
Alternative Splicing GalleryENSG00000236485
Gene ExpressionLINC01945 [ NCBI-GEO ]   LINC01945 [ EBI - ARRAY_EXPRESS ]   LINC01945 [ SEEK ]   LINC01945 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01945 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928067
GTEX Portal (Tissue expression)LINC01945
Human Protein AtlasENSG00000236485-LINC01945 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01945
DMDM Disease mutations101928067
Blocks (Seattle)LINC01945
Human Protein Atlas [tissue]ENSG00000236485-LINC01945 [tissue]
Protein Interaction databases
FunCoupENSG00000236485
BioGRIDLINC01945
STRING (EMBL)LINC01945
ZODIACLINC01945
Ontologies - Pathways
Huge Navigator LINC01945 [HugePedia]
snp3D : Map Gene to Disease101928067
BioCentury BCIQLINC01945
ClinGenLINC01945
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928067
Clinical trialLINC01945
Miscellaneous
canSAR (ICR)LINC01945 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01945
EVEXLINC01945
GoPubMedLINC01945
iHOPLINC01945
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:36 CET 2017

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