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LINC01946 (long intergenic non-protein coding RNA 1946)

Identity

Other alias-
HGNC (Hugo) LINC01946
LocusID (NCBI) 105374449
Atlas_Id 80185
Location 2p23.1  [Link to chromosome band 2p23]
Location_base_pair Starts at 31793821 and ends at 31803980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01946   52770
Cards
Entrez_Gene (NCBI)LINC01946  105374449  long intergenic non-protein coding RNA 1946
Aliases
GeneCards (Weizmann)LINC01946
Ensembl hg19 (Hinxton)ENSG00000223647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223647 [Gene_View]  chr2:31793821-31803980 [Contig_View]  LINC01946 [Vega]
ICGC DataPortalENSG00000223647
TCGA cBioPortalLINC01946
AceView (NCBI)LINC01946
Genatlas (Paris)LINC01946
WikiGenes105374449
SOURCE (Princeton)LINC01946
Genetics Home Reference (NIH)LINC01946
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01946  -     chr2:31793821-31803980 -  2p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01946  -     2p23.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01946 - 2p23.1 [CytoView hg19]  LINC01946 - 2p23.1 [CytoView hg38]
Mapping of homologs : NCBILINC01946 [Mapview hg19]  LINC01946 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW594541
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01946
Cluster EST : UnigeneHs.580386 [ NCBI ]
CGAP (NCI)Hs.580386
Alternative Splicing GalleryENSG00000223647
Gene ExpressionLINC01946 [ NCBI-GEO ]   LINC01946 [ EBI - ARRAY_EXPRESS ]   LINC01946 [ SEEK ]   LINC01946 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01946 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374449
GTEX Portal (Tissue expression)LINC01946
Human Protein AtlasENSG00000223647-LINC01946 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01946
DMDM Disease mutations105374449
Blocks (Seattle)LINC01946
Human Protein Atlas [tissue]ENSG00000223647-LINC01946 [tissue]
Protein Interaction databases
FunCoupENSG00000223647
BioGRIDLINC01946
STRING (EMBL)LINC01946
ZODIACLINC01946
Ontologies - Pathways
Huge Navigator LINC01946 [HugePedia]
snp3D : Map Gene to Disease105374449
BioCentury BCIQLINC01946
ClinGenLINC01946
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374449
Clinical trialLINC01946
Miscellaneous
canSAR (ICR)LINC01946 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01946
EVEXLINC01946
GoPubMedLINC01946
iHOPLINC01946
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:36 CET 2017

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