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LINC01947 (long intergenic non-protein coding RNA 1947)

Identity

Other aliasCTB-7E3.1
HGNC (Hugo) LINC01947
LocusID (NCBI) 102557615
Atlas_Id 79746
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 166905222 and ends at 166926370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01947   52771
Cards
Entrez_Gene (NCBI)LINC01947  102557615  long intergenic non-protein coding RNA 1947
AliasesCTB-7E3.1
GeneCards (Weizmann)LINC01947
Ensembl hg19 (Hinxton)ENSG00000254130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254130 [Gene_View]  ENSG00000254130 [Sequence]  chr5:166905222-166926370 [Contig_View]  LINC01947 [Vega]
ICGC DataPortalENSG00000254130
TCGA cBioPortalLINC01947
AceView (NCBI)LINC01947
Genatlas (Paris)LINC01947
WikiGenes102557615
SOURCE (Princeton)LINC01947
Genetics Home Reference (NIH)LINC01947
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01947  -     chr5:166905222-166926370 -  5q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01947  -     5q34   [Description]    (hg19-Feb_2009)
LINC01947 - 5q34 [CytoView hg19]  LINC01947 - 5q34 [CytoView hg38]
Mapping of homologs : NCBILINC01947 [Mapview hg19]  LINC01947 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB052051 DB460551
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01947
Alternative Splicing GalleryENSG00000254130
Gene ExpressionLINC01947 [ NCBI-GEO ]   LINC01947 [ EBI - ARRAY_EXPRESS ]   LINC01947 [ SEEK ]   LINC01947 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01947 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102557615
GTEX Portal (Tissue expression)LINC01947
Human Protein AtlasENSG00000254130-LINC01947 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01947
DMDM Disease mutations102557615
Blocks (Seattle)LINC01947
Human Protein Atlas [tissue]ENSG00000254130-LINC01947 [tissue]
Protein Interaction databases
FunCoupENSG00000254130
BioGRIDLINC01947
STRING (EMBL)LINC01947
ZODIACLINC01947
Ontologies - Pathways
Huge Navigator LINC01947 [HugePedia]
snp3D : Map Gene to Disease102557615
BioCentury BCIQLINC01947
ClinGenLINC01947
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102557615
Clinical trialLINC01947
Miscellaneous
canSAR (ICR)LINC01947 (select the gene name)
DataMed IndexLINC01947
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01947
EVEXLINC01947
GoPubMedLINC01947
iHOPLINC01947
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:29 CEST 2019

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