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LINC01948 (long intergenic non-protein coding RNA 1948)

Identity

Other alias-
HGNC (Hugo) LINC01948
LocusID (NCBI) 102467147
Atlas_Id 79403
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56457795 and ends at 56481769 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01948   52772
Cards
Entrez_Gene (NCBI)LINC01948  102467147  long intergenic non-protein coding RNA 1948
Aliases
GeneCards (Weizmann)LINC01948
Ensembl hg19 (Hinxton)ENSG00000248727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248727 [Gene_View]  ENSG00000248727 [Sequence]  chr5:56457795-56481769 [Contig_View]  LINC01948 [Vega]
ICGC DataPortalENSG00000248727
TCGA cBioPortalLINC01948
AceView (NCBI)LINC01948
Genatlas (Paris)LINC01948
WikiGenes102467147
SOURCE (Princeton)LINC01948
Genetics Home Reference (NIH)LINC01948
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01948  -     chr5:56457795-56481769 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01948  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01948 - 5q11.2 [CytoView hg19]  LINC01948 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBILINC01948 [Mapview hg19]  LINC01948 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX484633 DB291781
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01948
Cluster EST : UnigeneHs.650177 [ NCBI ]
CGAP (NCI)Hs.650177
Alternative Splicing GalleryENSG00000248727
Gene ExpressionLINC01948 [ NCBI-GEO ]   LINC01948 [ EBI - ARRAY_EXPRESS ]   LINC01948 [ SEEK ]   LINC01948 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01948 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467147
GTEX Portal (Tissue expression)LINC01948
Human Protein AtlasENSG00000248727-LINC01948 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01948
DMDM Disease mutations102467147
Blocks (Seattle)LINC01948
Human Protein Atlas [tissue]ENSG00000248727-LINC01948 [tissue]
Protein Interaction databases
FunCoupENSG00000248727
BioGRIDLINC01948
STRING (EMBL)LINC01948
ZODIACLINC01948
Ontologies - Pathways
Huge Navigator LINC01948 [HugePedia]
snp3D : Map Gene to Disease102467147
BioCentury BCIQLINC01948
ClinGenLINC01948
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467147
Clinical trialLINC01948
Miscellaneous
canSAR (ICR)LINC01948 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01948
EVEXLINC01948
GoPubMedLINC01948
iHOPLINC01948
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:30 CEST 2018

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