Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01949 (long intergenic non-protein coding RNA 1949)

Identity

Other alias-
HGNC (Hugo) LINC01949
LocusID (NCBI) 55338
Atlas_Id 78857
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 87216606 and ends at 87239790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01949   25650
Cards
Entrez_Gene (NCBI)LINC01949  55338  long intergenic non-protein coding RNA 1949
Aliases
GeneCards (Weizmann)LINC01949
Ensembl hg19 (Hinxton)ENSG00000233828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233828 [Gene_View]  ENSG00000233828 [Sequence]  chr5:87216606-87239790 [Contig_View]  LINC01949 [Vega]
ICGC DataPortalENSG00000233828
TCGA cBioPortalLINC01949
AceView (NCBI)LINC01949
Genatlas (Paris)LINC01949
WikiGenes55338
SOURCE (Princeton)LINC01949
Genetics Home Reference (NIH)LINC01949
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01949  -     chr5:87216606-87239790 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01949  -     5q14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01949 - 5q14.3 [CytoView hg19]  LINC01949 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC01949 [Mapview hg19]  LINC01949 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002104 AK002154 AK023417 AK023539 AK024354
RefSeq transcript (Entrez)NM_018382
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01949
Cluster EST : UnigeneHs.677194 [ NCBI ]
CGAP (NCI)Hs.677194
Alternative Splicing GalleryENSG00000233828
Gene ExpressionLINC01949 [ NCBI-GEO ]   LINC01949 [ EBI - ARRAY_EXPRESS ]   LINC01949 [ SEEK ]   LINC01949 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01949 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55338
GTEX Portal (Tissue expression)LINC01949
Human Protein AtlasENSG00000233828-LINC01949 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01949
DMDM Disease mutations55338
Blocks (Seattle)LINC01949
Human Protein Atlas [tissue]ENSG00000233828-LINC01949 [tissue]
IPIIPI00020054   IPI00746311   
Protein Interaction databases
FunCoupENSG00000233828
BioGRIDLINC01949
STRING (EMBL)LINC01949
ZODIACLINC01949
Ontologies - Pathways
Huge Navigator LINC01949 [HugePedia]
snp3D : Map Gene to Disease55338
BioCentury BCIQLINC01949
ClinGenLINC01949
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55338
Clinical trialLINC01949
Miscellaneous
canSAR (ICR)LINC01949 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01949
EVEXLINC01949
GoPubMedLINC01949
iHOPLINC01949
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:30 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.