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LINC01950 (long intergenic non-protein coding RNA 1950)

Identity

Other alias-
HGNC (Hugo) LINC01950
LocusID (NCBI) 102467213
Atlas_Id 79825
Location 5q21.3  [Link to chromosome band 5q21]
Location_base_pair Starts at 106815197 and ends at 107011014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01950   52773
Cards
Entrez_Gene (NCBI)LINC01950  102467213  long intergenic non-protein coding RNA 1950
Aliases
GeneCards (Weizmann)LINC01950
Ensembl hg19 (Hinxton)ENSG00000251027 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251027 [Gene_View]  ENSG00000251027 [Sequence]  chr5:106815197-107011014 [Contig_View]  LINC01950 [Vega]
ICGC DataPortalENSG00000251027
TCGA cBioPortalLINC01950
AceView (NCBI)LINC01950
Genatlas (Paris)LINC01950
WikiGenes102467213
SOURCE (Princeton)LINC01950
Genetics Home Reference (NIH)LINC01950
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01950  -     chr5:106815197-107011014 -  5q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01950  -     5q21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01950 - 5q21.3 [CytoView hg19]  LINC01950 - 5q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01950 [Mapview hg19]  LINC01950 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA292843 AA398661 BG184874 DB083490
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01950
Cluster EST : UnigeneHs.570923 [ NCBI ]
CGAP (NCI)Hs.570923
Alternative Splicing GalleryENSG00000251027
Gene ExpressionLINC01950 [ NCBI-GEO ]   LINC01950 [ EBI - ARRAY_EXPRESS ]   LINC01950 [ SEEK ]   LINC01950 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01950 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467213
GTEX Portal (Tissue expression)LINC01950
Human Protein AtlasENSG00000251027-LINC01950 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01950
DMDM Disease mutations102467213
Blocks (Seattle)LINC01950
Human Protein Atlas [tissue]ENSG00000251027-LINC01950 [tissue]
Protein Interaction databases
FunCoupENSG00000251027
BioGRIDLINC01950
STRING (EMBL)LINC01950
ZODIACLINC01950
Ontologies - Pathways
Huge Navigator LINC01950 [HugePedia]
snp3D : Map Gene to Disease102467213
BioCentury BCIQLINC01950
ClinGenLINC01950
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467213
Clinical trialLINC01950
Miscellaneous
canSAR (ICR)LINC01950 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01950
EVEXLINC01950
GoPubMedLINC01950
iHOPLINC01950
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:30 CEST 2018

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