Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01953 (long intergenic non-protein coding RNA 1953)

Identity

Other alias-
HGNC (Hugo) LINC01953
LocusID (NCBI) 105373863
Atlas_Id 79967
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 213155816 and ends at 213167710 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01953   52776
Cards
Entrez_Gene (NCBI)LINC01953  105373863  long intergenic non-protein coding RNA 1953
Aliases
GeneCards (Weizmann)LINC01953
Ensembl hg19 (Hinxton)ENSG00000236193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236193 [Gene_View]  chr2:213155816-213167710 [Contig_View]  LINC01953 [Vega]
ICGC DataPortalENSG00000236193
TCGA cBioPortalLINC01953
AceView (NCBI)LINC01953
Genatlas (Paris)LINC01953
WikiGenes105373863
SOURCE (Princeton)LINC01953
Genetics Home Reference (NIH)LINC01953
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01953  -     chr2:213155816-213167710 -  2q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01953  -     2q34   [Description]    (hg19-Feb_2009)
EnsemblLINC01953 - 2q34 [CytoView hg19]  LINC01953 - 2q34 [CytoView hg38]
Mapping of homologs : NCBILINC01953 [Mapview hg19]  LINC01953 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW510924 BI826738
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01953
Cluster EST : UnigeneHs.258045 [ NCBI ]
CGAP (NCI)Hs.258045
Alternative Splicing GalleryENSG00000236193
Gene ExpressionLINC01953 [ NCBI-GEO ]   LINC01953 [ EBI - ARRAY_EXPRESS ]   LINC01953 [ SEEK ]   LINC01953 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01953 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373863
GTEX Portal (Tissue expression)LINC01953
Human Protein AtlasENSG00000236193-LINC01953 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01953
DMDM Disease mutations105373863
Blocks (Seattle)LINC01953
Human Protein Atlas [tissue]ENSG00000236193-LINC01953 [tissue]
Protein Interaction databases
FunCoupENSG00000236193
BioGRIDLINC01953
STRING (EMBL)LINC01953
ZODIACLINC01953
Ontologies - Pathways
Huge Navigator LINC01953 [HugePedia]
snp3D : Map Gene to Disease105373863
BioCentury BCIQLINC01953
ClinGenLINC01953
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373863
Clinical trialLINC01953
Miscellaneous
canSAR (ICR)LINC01953 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01953
EVEXLINC01953
GoPubMedLINC01953
iHOPLINC01953
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:37 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.