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LINC01954 (long intergenic non-protein coding RNA 1954)

Identity

Other alias-
HGNC (Hugo) LINC01954
LocusID (NCBI) 101929733
Atlas_Id 79625
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 10878267 and ends at 10885118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01954   52779
Cards
Entrez_Gene (NCBI)LINC01954  101929733  long intergenic non-protein coding RNA 1954
Aliases
GeneCards (Weizmann)LINC01954
Ensembl hg19 (Hinxton)ENSG00000271952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271952 [Gene_View]  chr2:10878267-10885118 [Contig_View]  LINC01954 [Vega]
ICGC DataPortalENSG00000271952
TCGA cBioPortalLINC01954
AceView (NCBI)LINC01954
Genatlas (Paris)LINC01954
WikiGenes101929733
SOURCE (Princeton)LINC01954
Genetics Home Reference (NIH)LINC01954
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01954  -     chr2:10878267-10885118 +  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01954  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01954 - 2p25.1 [CytoView hg19]  LINC01954 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBILINC01954 [Mapview hg19]  LINC01954 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG201257
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01954
Cluster EST : UnigeneHs.736697 [ NCBI ]
CGAP (NCI)Hs.736697
Alternative Splicing GalleryENSG00000271952
Gene ExpressionLINC01954 [ NCBI-GEO ]   LINC01954 [ EBI - ARRAY_EXPRESS ]   LINC01954 [ SEEK ]   LINC01954 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01954 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929733
GTEX Portal (Tissue expression)LINC01954
Human Protein AtlasENSG00000271952-LINC01954 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01954
DMDM Disease mutations101929733
Blocks (Seattle)LINC01954
Human Protein Atlas [tissue]ENSG00000271952-LINC01954 [tissue]
Protein Interaction databases
FunCoupENSG00000271952
BioGRIDLINC01954
STRING (EMBL)LINC01954
ZODIACLINC01954
Ontologies - Pathways
Huge Navigator LINC01954 [HugePedia]
snp3D : Map Gene to Disease101929733
BioCentury BCIQLINC01954
ClinGenLINC01954
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929733
Clinical trialLINC01954
Miscellaneous
canSAR (ICR)LINC01954 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01954
EVEXLINC01954
GoPubMedLINC01954
iHOPLINC01954
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:19 CET 2017

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