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LINC01957 (long intergenic non-protein coding RNA 1957)

Identity

Other alias-
HGNC (Hugo) LINC01957
LocusID (NCBI) 101927059
Atlas_Id 79723
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 114576041 and ends at 114579970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01957   52783
Cards
Entrez_Gene (NCBI)LINC01957  101927059  long intergenic non-protein coding RNA 1957
Aliases
GeneCards (Weizmann)LINC01957
Ensembl hg19 (Hinxton)ENSG00000251542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251542 [Gene_View]  ENSG00000251542 [Sequence]  chr5:114576041-114579970 [Contig_View]  LINC01957 [Vega]
ICGC DataPortalENSG00000251542
TCGA cBioPortalLINC01957
AceView (NCBI)LINC01957
Genatlas (Paris)LINC01957
WikiGenes101927059
SOURCE (Princeton)LINC01957
Genetics Home Reference (NIH)LINC01957
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01957  -     chr5:114576041-114579970 +  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01957  -     5q22.3   [Description]    (hg19-Feb_2009)
LINC01957 - 5q22.3 [CytoView hg19]  LINC01957 - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC01957 [Mapview hg19]  LINC01957 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038569
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01957
Cluster EST : UnigeneHs.385789 [ NCBI ]
CGAP (NCI)Hs.385789
Alternative Splicing GalleryENSG00000251542
Gene ExpressionLINC01957 [ NCBI-GEO ]   LINC01957 [ EBI - ARRAY_EXPRESS ]   LINC01957 [ SEEK ]   LINC01957 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01957 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927059
GTEX Portal (Tissue expression)LINC01957
Human Protein AtlasENSG00000251542-LINC01957 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01957
DMDM Disease mutations101927059
Blocks (Seattle)LINC01957
Human Protein Atlas [tissue]ENSG00000251542-LINC01957 [tissue]
Protein Interaction databases
FunCoupENSG00000251542
BioGRIDLINC01957
STRING (EMBL)LINC01957
ZODIACLINC01957
Ontologies - Pathways
Huge Navigator LINC01957 [HugePedia]
snp3D : Map Gene to Disease101927059
BioCentury BCIQLINC01957
ClinGenLINC01957
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927059
Clinical trialLINC01957
Miscellaneous
canSAR (ICR)LINC01957 (select the gene name)
DataMed IndexLINC01957
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01957
EVEXLINC01957
GoPubMedLINC01957
iHOPLINC01957
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:30 CEST 2019

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