Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01959 (long intergenic non-protein coding RNA 1959)

Identity

Other alias-
HGNC (Hugo) LINC01959
LocusID (NCBI) 340074
Atlas_Id 78928
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135648683 and ends at 135653935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01959   27965
Cards
Entrez_Gene (NCBI)LINC01959  340074  long intergenic non-protein coding RNA 1959
Aliases
GeneCards (Weizmann)LINC01959
Ensembl hg19 (Hinxton)ENSG00000251045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251045 [Gene_View]  ENSG00000251045 [Sequence]  chr5:135648683-135653935 [Contig_View]  LINC01959 [Vega]
ICGC DataPortalENSG00000251045
TCGA cBioPortalLINC01959
AceView (NCBI)LINC01959
Genatlas (Paris)LINC01959
WikiGenes340074
SOURCE (Princeton)LINC01959
Genetics Home Reference (NIH)LINC01959
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01959  -     chr5:135648683-135653935 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01959  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01959 - 5q31.1 [CytoView hg19]  LINC01959 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01959 [Mapview hg19]  LINC01959 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040891
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01959
Cluster EST : UnigeneHs.434633 [ NCBI ]
CGAP (NCI)Hs.434633
Alternative Splicing GalleryENSG00000251045
Gene ExpressionLINC01959 [ NCBI-GEO ]   LINC01959 [ EBI - ARRAY_EXPRESS ]   LINC01959 [ SEEK ]   LINC01959 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01959 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)340074
GTEX Portal (Tissue expression)LINC01959
Human Protein AtlasENSG00000251045-LINC01959 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01959
DMDM Disease mutations340074
Blocks (Seattle)LINC01959
Human Protein Atlas [tissue]ENSG00000251045-LINC01959 [tissue]
Protein Interaction databases
FunCoupENSG00000251045
BioGRIDLINC01959
STRING (EMBL)LINC01959
ZODIACLINC01959
Ontologies - Pathways
Huge Navigator LINC01959 [HugePedia]
snp3D : Map Gene to Disease340074
BioCentury BCIQLINC01959
ClinGenLINC01959
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340074
Clinical trialLINC01959
Miscellaneous
canSAR (ICR)LINC01959 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01959
EVEXLINC01959
GoPubMedLINC01959
iHOPLINC01959
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:31 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.