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LINC01960 (long intergenic non-protein coding RNA 1960)

Identity

Other alias-
HGNC (Hugo) LINC01960
LocusID (NCBI) 100128905
Atlas_Id 80234
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 174025280 and ends at 174027157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01960   52785
Cards
Entrez_Gene (NCBI)LINC01960  100128905  long intergenic non-protein coding RNA 1960
Aliases
GeneCards (Weizmann)LINC01960
Ensembl hg19 (Hinxton)ENSG00000260868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260868 [Gene_View]  chr2:174025280-174027157 [Contig_View]  LINC01960 [Vega]
ICGC DataPortalENSG00000260868
TCGA cBioPortalLINC01960
AceView (NCBI)LINC01960
Genatlas (Paris)LINC01960
WikiGenes100128905
SOURCE (Princeton)LINC01960
Genetics Home Reference (NIH)LINC01960
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01960  -     chr2:174025280-174027157 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01960  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01960 - 2q31.1 [CytoView hg19]  LINC01960 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01960 [Mapview hg19]  LINC01960 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI677644 BC068274 BC092496 BX091417
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01960
Cluster EST : UnigeneHs.456944 [ NCBI ]
CGAP (NCI)Hs.456944
Alternative Splicing GalleryENSG00000260868
Gene ExpressionLINC01960 [ NCBI-GEO ]   LINC01960 [ EBI - ARRAY_EXPRESS ]   LINC01960 [ SEEK ]   LINC01960 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01960 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100128905
GTEX Portal (Tissue expression)LINC01960
Human Protein AtlasENSG00000260868-LINC01960 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01960
DMDM Disease mutations100128905
Blocks (Seattle)LINC01960
Human Protein Atlas [tissue]ENSG00000260868-LINC01960 [tissue]
IPIIPI00982945   IPI00921195   
Protein Interaction databases
FunCoupENSG00000260868
BioGRIDLINC01960
STRING (EMBL)LINC01960
ZODIACLINC01960
Ontologies - Pathways
Huge Navigator LINC01960 [HugePedia]
snp3D : Map Gene to Disease100128905
BioCentury BCIQLINC01960
ClinGenLINC01960
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128905
Clinical trialLINC01960
Miscellaneous
canSAR (ICR)LINC01960 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01960
EVEXLINC01960
GoPubMedLINC01960
iHOPLINC01960
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:40:38 CET 2017

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