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LINC01961 (long intergenic non-protein coding RNA 1961)

Identity

Other alias-
HGNC (Hugo) LINC01961
LocusID (NCBI) 101927424
Atlas_Id 79573
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113513342 and ends at 113515294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01961   52786
Cards
Entrez_Gene (NCBI)LINC01961  101927424  long intergenic non-protein coding RNA 1961
Aliases
GeneCards (Weizmann)LINC01961
Ensembl hg19 (Hinxton)ENSG00000234148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234148 [Gene_View]  chr2:113513342-113515294 [Contig_View]  LINC01961 [Vega]
ICGC DataPortalENSG00000234148
TCGA cBioPortalLINC01961
AceView (NCBI)LINC01961
Genatlas (Paris)LINC01961
WikiGenes101927424
SOURCE (Princeton)LINC01961
Genetics Home Reference (NIH)LINC01961
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01961  -     chr2:113513342-113515294 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01961  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01961 - 2q14.1 [CytoView hg19]  LINC01961 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBILINC01961 [Mapview hg19]  LINC01961 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY343901
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01961
Cluster EST : UnigeneHs.650159 [ NCBI ]
CGAP (NCI)Hs.650159
Alternative Splicing GalleryENSG00000234148
Gene ExpressionLINC01961 [ NCBI-GEO ]   LINC01961 [ EBI - ARRAY_EXPRESS ]   LINC01961 [ SEEK ]   LINC01961 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01961 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927424
GTEX Portal (Tissue expression)LINC01961
Human Protein AtlasENSG00000234148-LINC01961 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01961
DMDM Disease mutations101927424
Blocks (Seattle)LINC01961
Human Protein Atlas [tissue]ENSG00000234148-LINC01961 [tissue]
Protein Interaction databases
FunCoupENSG00000234148
BioGRIDLINC01961
STRING (EMBL)LINC01961
ZODIACLINC01961
Ontologies - Pathways
Huge Navigator LINC01961 [HugePedia]
snp3D : Map Gene to Disease101927424
BioCentury BCIQLINC01961
ClinGenLINC01961
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927424
Clinical trialLINC01961
Miscellaneous
canSAR (ICR)LINC01961 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01961
EVEXLINC01961
GoPubMedLINC01961
iHOPLINC01961
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:19 CET 2017

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