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LINC01962 (long intergenic non-protein coding RNA 1962)

Identity

Other alias-
HGNC (Hugo) LINC01962
LocusID (NCBI) 102577426
Atlas_Id 79251
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181191046 and ends at 181191908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01962   52787
Cards
Entrez_Gene (NCBI)LINC01962  102577426  long intergenic non-protein coding RNA 1962
Aliases
GeneCards (Weizmann)LINC01962
Ensembl hg19 (Hinxton)ENSG00000248473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248473 [Gene_View]  ENSG00000248473 [Sequence]  chr5:181191046-181191908 [Contig_View]  LINC01962 [Vega]
ICGC DataPortalENSG00000248473
TCGA cBioPortalLINC01962
AceView (NCBI)LINC01962
Genatlas (Paris)LINC01962
WikiGenes102577426
SOURCE (Princeton)LINC01962
Genetics Home Reference (NIH)LINC01962
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01962  -     chr5:181191046-181191908 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01962  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01962 - 5q35.3 [CytoView hg19]  LINC01962 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBILINC01962 [Mapview hg19]  LINC01962 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY011707
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01962
Cluster EST : UnigeneHs.277359 [ NCBI ]
CGAP (NCI)Hs.277359
Alternative Splicing GalleryENSG00000248473
Gene ExpressionLINC01962 [ NCBI-GEO ]   LINC01962 [ EBI - ARRAY_EXPRESS ]   LINC01962 [ SEEK ]   LINC01962 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01962 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102577426
GTEX Portal (Tissue expression)LINC01962
Human Protein AtlasENSG00000248473-LINC01962 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01962
DMDM Disease mutations102577426
Blocks (Seattle)LINC01962
Human Protein Atlas [tissue]ENSG00000248473-LINC01962 [tissue]
Protein Interaction databases
FunCoupENSG00000248473
BioGRIDLINC01962
STRING (EMBL)LINC01962
ZODIACLINC01962
Ontologies - Pathways
Huge Navigator LINC01962 [HugePedia]
snp3D : Map Gene to Disease102577426
BioCentury BCIQLINC01962
ClinGenLINC01962
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102577426
Clinical trialLINC01962
Miscellaneous
canSAR (ICR)LINC01962 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01962
EVEXLINC01962
GoPubMedLINC01962
iHOPLINC01962
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:32 CEST 2018

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