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LINC01972 (long intergenic non-protein coding RNA 1972)

Identity

Other alias-
HGNC (Hugo) LINC01972
LocusID (NCBI) 105374293
Atlas_Id 79665
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194765238 and ends at 194768709 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01972   52798
Cards
Entrez_Gene (NCBI)LINC01972  105374293  long intergenic non-protein coding RNA 1972
Aliases
GeneCards (Weizmann)LINC01972
Ensembl hg19 (Hinxton)ENSG00000230401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230401 [Gene_View]  ENSG00000230401 [Sequence]  chr3:194765238-194768709 [Contig_View]  LINC01972 [Vega]
ICGC DataPortalENSG00000230401
TCGA cBioPortalLINC01972
AceView (NCBI)LINC01972
Genatlas (Paris)LINC01972
WikiGenes105374293
SOURCE (Princeton)LINC01972
Genetics Home Reference (NIH)LINC01972
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01972  -     chr3:194765238-194768709 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01972  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblLINC01972 - 3q29 [CytoView hg19]  LINC01972 - 3q29 [CytoView hg38]
Mapping of homologs : NCBILINC01972 [Mapview hg19]  LINC01972 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU567880
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01972
Alternative Splicing GalleryENSG00000230401
Gene ExpressionLINC01972 [ NCBI-GEO ]   LINC01972 [ EBI - ARRAY_EXPRESS ]   LINC01972 [ SEEK ]   LINC01972 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01972 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374293
GTEX Portal (Tissue expression)LINC01972
Human Protein AtlasENSG00000230401-LINC01972 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01972
DMDM Disease mutations105374293
Blocks (Seattle)LINC01972
Human Protein Atlas [tissue]ENSG00000230401-LINC01972 [tissue]
Protein Interaction databases
FunCoupENSG00000230401
BioGRIDLINC01972
STRING (EMBL)LINC01972
ZODIACLINC01972
Ontologies - Pathways
Huge Navigator LINC01972 [HugePedia]
snp3D : Map Gene to Disease105374293
BioCentury BCIQLINC01972
ClinGenLINC01972
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374293
Clinical trialLINC01972
Miscellaneous
canSAR (ICR)LINC01972 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01972
EVEXLINC01972
GoPubMedLINC01972
iHOPLINC01972
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:33 CEST 2018

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