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LINC01975 (long intergenic non-protein coding RNA 1975)

Identity

Other alias-
HGNC (Hugo) LINC01975
LocusID (NCBI) 105371496
Atlas_Id 79163
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3977103 and ends at 3983145 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01975   52802
Cards
Entrez_Gene (NCBI)LINC01975  105371496  long intergenic non-protein coding RNA 1975
Aliases
GeneCards (Weizmann)LINC01975
Ensembl hg19 (Hinxton)ENSG00000263312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263312 [Gene_View]  chr17:3977103-3983145 [Contig_View]  LINC01975 [Vega]
ICGC DataPortalENSG00000263312
TCGA cBioPortalLINC01975
AceView (NCBI)LINC01975
Genatlas (Paris)LINC01975
WikiGenes105371496
SOURCE (Princeton)LINC01975
Genetics Home Reference (NIH)LINC01975
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01975  -     chr17:3977103-3983145 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01975  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01975 - 17p13.2 [CytoView hg19]  LINC01975 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBILINC01975 [Mapview hg19]  LINC01975 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA430127 DB313040
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01975
Cluster EST : UnigeneHs.579239 [ NCBI ]
CGAP (NCI)Hs.579239
Alternative Splicing GalleryENSG00000263312
Gene ExpressionLINC01975 [ NCBI-GEO ]   LINC01975 [ EBI - ARRAY_EXPRESS ]   LINC01975 [ SEEK ]   LINC01975 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01975 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371496
GTEX Portal (Tissue expression)LINC01975
Human Protein AtlasENSG00000263312-LINC01975 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01975
DMDM Disease mutations105371496
Blocks (Seattle)LINC01975
Human Protein Atlas [tissue]ENSG00000263312-LINC01975 [tissue]
Protein Interaction databases
FunCoupENSG00000263312
BioGRIDLINC01975
STRING (EMBL)LINC01975
ZODIACLINC01975
Ontologies - Pathways
Huge Navigator LINC01975 [HugePedia]
snp3D : Map Gene to Disease105371496
BioCentury BCIQLINC01975
ClinGenLINC01975
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371496
Clinical trialLINC01975
Miscellaneous
canSAR (ICR)LINC01975 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01975
EVEXLINC01975
GoPubMedLINC01975
iHOPLINC01975
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:48 CET 2017

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