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LINC01977 (long intergenic non-protein coding RNA 1977)

Identity

Other alias-
HGNC (Hugo) LIOC01778/b>
LocusID (NCBI) 105371919
Atlas_Id 79803
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79823452 and ends at 79827704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01977   52804
Cards
Entrez_Gene (NCBI)LINC01977  105371919  long intergenic non-protein coding RNA 1977
Aliases
GeneCards (Weizmann)LINC01977
Ensembl hg19 (Hinxton)ENSG00000262772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262772 [Gene_View]  chr17:79823452-79827704 [Contig_View]  LINC01977 [Vega]
ICGC DataPortalENSG00000262772
TCGA cBioPortalLINC01977
AceView (NCBI)LINC01977
Genatlas (Paris)LINC01977
WikiGenes105371919
SOURCE (Princeton)LINC01977
Genetics Home Reference (NIH)LINC01977
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01977  -     chr17:79823452-79827704 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01977  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01977 - 17q25.3 [CytoView hg19]  LINC01977 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01977 [Mapview hg19]  LINC01977 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM714401 BM781621
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01977
Alternative Splicing GalleryENSG00000262772
Gene ExpressionLINC01977 [ NCBI-GEO ]   LINC01977 [ EBI - ARRAY_EXPRESS ]   LINC01977 [ SEEK ]   LINC01977 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01977 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371919
GTEX Portal (Tissue expression)LINC01977
Human Protein AtlasENSG00000262772-LINC01977 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01977
DMDM Disease mutations105371919
Blocks (Seattle)LINC01977
Human Protein Atlas [tissue]ENSG00000262772-LINC01977 [tissue]
Protein Interaction databases
FunCoupENSG00000262772
BioGRIDLINC01977
STRING (EMBL)LINC01977
ZODIACLINC01977
Ontologies - Pathways
Huge Navigator LINC01977 [HugePedia]
snp3D : Map Gene to Disease105371919
BioCentury BCIQLINC01977
ClinGenLINC01977
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371919
Clinical trialLINC01977
Miscellaneous
canSAR (ICR)LINC01977 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01977
EVEXLINC01977
GoPubMedLINC01977
iHOPLINC01977
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:49 CET 2017

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