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LINC01978 (long intergenic non-protein coding RNA 1978)

Identity

Other alias-
HGNC (Hugo) LINC01978
LocusID (NCBI) 101928738
Atlas_Id 79369
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79919357 and ends at 79924004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01978   52806
Cards
Entrez_Gene (NCBI)LINC01978  101928738  long intergenic non-protein coding RNA 1978
Aliases
GeneCards (Weizmann)LINC01978
Ensembl hg19 (Hinxton)ENSG00000262188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262188 [Gene_View]  chr17:79919357-79924004 [Contig_View]  LINC01978 [Vega]
ICGC DataPortalENSG00000262188
TCGA cBioPortalLINC01978
AceView (NCBI)LINC01978
Genatlas (Paris)LINC01978
WikiGenes101928738
SOURCE (Princeton)LINC01978
Genetics Home Reference (NIH)LINC01978
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01978  -     chr17:79919357-79924004 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01978  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01978 - 17q25.3 [CytoView hg19]  LINC01978 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01978 [Mapview hg19]  LINC01978 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC044939 BM850955
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01978
Cluster EST : UnigeneHs.630666 [ NCBI ]
CGAP (NCI)Hs.630666
Alternative Splicing GalleryENSG00000262188
Gene ExpressionLINC01978 [ NCBI-GEO ]   LINC01978 [ EBI - ARRAY_EXPRESS ]   LINC01978 [ SEEK ]   LINC01978 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01978 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928738
GTEX Portal (Tissue expression)LINC01978
Human Protein AtlasENSG00000262188-LINC01978 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01978
DMDM Disease mutations101928738
Blocks (Seattle)LINC01978
Human Protein Atlas [tissue]ENSG00000262188-LINC01978 [tissue]
Protein Interaction databases
FunCoupENSG00000262188
BioGRIDLINC01978
STRING (EMBL)LINC01978
ZODIACLINC01978
Ontologies - Pathways
Huge Navigator LINC01978 [HugePedia]
snp3D : Map Gene to Disease101928738
BioCentury BCIQLINC01978
ClinGenLINC01978
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928738
Clinical trialLINC01978
Miscellaneous
canSAR (ICR)LINC01978 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01978
EVEXLINC01978
GoPubMedLINC01978
iHOPLINC01978
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:49 CET 2017

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