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LINC01980 (long intergenic non-protein coding RNA 1980)

Identity

Other alias-
HGNC (Hugo) LINC01980
LocusID (NCBI) 105377007
Atlas_Id 79812
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 27797588 and ends at 27860325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01980   52808
Cards
Entrez_Gene (NCBI)LINC01980  105377007  long intergenic non-protein coding RNA 1980
Aliases
GeneCards (Weizmann)LINC01980
Ensembl hg19 (Hinxton)ENSG00000225548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225548 [Gene_View]  ENSG00000225548 [Sequence]  chr3:27797588-27860325 [Contig_View]  LINC01980 [Vega]
ICGC DataPortalENSG00000225548
TCGA cBioPortalLINC01980
AceView (NCBI)LINC01980
Genatlas (Paris)LINC01980
WikiGenes105377007
SOURCE (Princeton)LINC01980
Genetics Home Reference (NIH)LINC01980
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01980  -     chr3:27797588-27860325 +  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01980  -     3p24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01980 - 3p24.1 [CytoView hg19]  LINC01980 - 3p24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01980 [Mapview hg19]  LINC01980 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01980
Alternative Splicing GalleryENSG00000225548
Gene ExpressionLINC01980 [ NCBI-GEO ]   LINC01980 [ EBI - ARRAY_EXPRESS ]   LINC01980 [ SEEK ]   LINC01980 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01980 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377007
GTEX Portal (Tissue expression)LINC01980
Human Protein AtlasENSG00000225548-LINC01980 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01980
DMDM Disease mutations105377007
Blocks (Seattle)LINC01980
Human Protein Atlas [tissue]ENSG00000225548-LINC01980 [tissue]
Protein Interaction databases
FunCoupENSG00000225548
BioGRIDLINC01980
STRING (EMBL)LINC01980
ZODIACLINC01980
Ontologies - Pathways
Huge Navigator LINC01980 [HugePedia]
snp3D : Map Gene to Disease105377007
BioCentury BCIQLINC01980
ClinGenLINC01980
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377007
Clinical trialLINC01980
Miscellaneous
canSAR (ICR)LINC01980 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01980
EVEXLINC01980
GoPubMedLINC01980
iHOPLINC01980
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:35 CEST 2018

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