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LINC01988 (long intergenic non-protein coding RNA 1988)

Identity

Other alias-
HGNC (Hugo) LINC01988
LocusID (NCBI) 100506319
Atlas_Id 78948
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44427922 and ends at 44429529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01988   52820
Cards
Entrez_Gene (NCBI)LINC01988  100506319  long intergenic non-protein coding RNA 1988
Aliases
GeneCards (Weizmann)LINC01988
Ensembl hg19 (Hinxton)ENSG00000283036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000283036 [Gene_View]  ENSG00000283036 [Sequence]  chr3:44427922-44429529 [Contig_View]  LINC01988 [Vega]
ICGC DataPortalENSG00000283036
TCGA cBioPortalLINC01988
AceView (NCBI)LINC01988
Genatlas (Paris)LINC01988
WikiGenes100506319
SOURCE (Princeton)LINC01988
Genetics Home Reference (NIH)LINC01988
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01988  -     chr3:44427922-44429529 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01988  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01988 - 3p21.31 [CytoView hg19]  LINC01988 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBILINC01988 [Mapview hg19]  LINC01988 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY013037
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01988
Cluster EST : UnigeneHs.180744 [ NCBI ]
CGAP (NCI)Hs.180744
Alternative Splicing GalleryENSG00000283036
Gene ExpressionLINC01988 [ NCBI-GEO ]   LINC01988 [ EBI - ARRAY_EXPRESS ]   LINC01988 [ SEEK ]   LINC01988 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01988 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506319
GTEX Portal (Tissue expression)LINC01988
Human Protein AtlasENSG00000283036-LINC01988 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01988
DMDM Disease mutations100506319
Blocks (Seattle)LINC01988
Human Protein Atlas [tissue]ENSG00000283036-LINC01988 [tissue]
Protein Interaction databases
FunCoupENSG00000283036
BioGRIDLINC01988
STRING (EMBL)LINC01988
ZODIACLINC01988
Ontologies - Pathways
Huge Navigator LINC01988 [HugePedia]
snp3D : Map Gene to Disease100506319
BioCentury BCIQLINC01988
ClinGenLINC01988
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506319
Clinical trialLINC01988
Miscellaneous
canSAR (ICR)LINC01988 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01988
EVEXLINC01988
GoPubMedLINC01988
iHOPLINC01988
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:36 CEST 2018

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