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LINC01990 (long intergenic non-protein coding RNA 1990)

Identity

Other alias-
HGNC (Hugo) LINC01990
LocusID (NCBI) 101929607
Atlas_Id 79616
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 107430930 and ends at 107463912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01990   52822
Cards
Entrez_Gene (NCBI)LINC01990  101929607  long intergenic non-protein coding RNA 1990
Aliases
GeneCards (Weizmann)LINC01990
Ensembl hg19 (Hinxton)ENSG00000273125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273125 [Gene_View]  ENSG00000273125 [Sequence]  chr3:107430930-107463912 [Contig_View]  LINC01990 [Vega]
ICGC DataPortalENSG00000273125
TCGA cBioPortalLINC01990
AceView (NCBI)LINC01990
Genatlas (Paris)LINC01990
WikiGenes101929607
SOURCE (Princeton)LINC01990
Genetics Home Reference (NIH)LINC01990
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01990  -     chr3:107430930-107463912 +  3q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01990  -     3q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01990 - 3q13.12 [CytoView hg19]  LINC01990 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01990 [Mapview hg19]  LINC01990 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042024
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01990
Cluster EST : UnigeneHs.252565 [ NCBI ]
CGAP (NCI)Hs.252565
Alternative Splicing GalleryENSG00000273125
Gene ExpressionLINC01990 [ NCBI-GEO ]   LINC01990 [ EBI - ARRAY_EXPRESS ]   LINC01990 [ SEEK ]   LINC01990 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01990 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929607
GTEX Portal (Tissue expression)LINC01990
Human Protein AtlasENSG00000273125-LINC01990 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01990
DMDM Disease mutations101929607
Blocks (Seattle)LINC01990
Human Protein Atlas [tissue]ENSG00000273125-LINC01990 [tissue]
Protein Interaction databases
FunCoupENSG00000273125
BioGRIDLINC01990
STRING (EMBL)LINC01990
ZODIACLINC01990
Ontologies - Pathways
Huge Navigator LINC01990 [HugePedia]
snp3D : Map Gene to Disease101929607
BioCentury BCIQLINC01990
ClinGenLINC01990
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929607
Clinical trialLINC01990
Miscellaneous
canSAR (ICR)LINC01990 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01990
EVEXLINC01990
GoPubMedLINC01990
iHOPLINC01990
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:37 CEST 2018

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