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LINC01999 (long intergenic non-protein coding RNA 1999)

Identity

Other alias-
HGNC (Hugo) LINC01999
LocusID (NCBI) 388406
Atlas_Id 78925
Location 17q23.2  [Link to chromosome band 17q23]
Location_base_pair Starts at 60564546 and ends at 60586620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01999   52834
Cards
Entrez_Gene (NCBI)LINC01999  388406  long intergenic non-protein coding RNA 1999
Aliases
GeneCards (Weizmann)LINC01999
Ensembl hg19 (Hinxton)ENSG00000267772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267772 [Gene_View]  chr17:60564546-60586620 [Contig_View]  LINC01999 [Vega]
ICGC DataPortalENSG00000267772
TCGA cBioPortalLINC01999
AceView (NCBI)LINC01999
Genatlas (Paris)LINC01999
WikiGenes388406
SOURCE (Princeton)LINC01999
Genetics Home Reference (NIH)LINC01999
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01999  -     chr17:60564546-60586620 +  17q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01999  -     17q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01999 - 17q23.2 [CytoView hg19]  LINC01999 - 17q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC01999 [Mapview hg19]  LINC01999 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131012
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01999
Cluster EST : UnigeneHs.368309 [ NCBI ]
CGAP (NCI)Hs.368309
Alternative Splicing GalleryENSG00000267772
Gene ExpressionLINC01999 [ NCBI-GEO ]   LINC01999 [ EBI - ARRAY_EXPRESS ]   LINC01999 [ SEEK ]   LINC01999 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01999 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388406
GTEX Portal (Tissue expression)LINC01999
Human Protein AtlasENSG00000267772-LINC01999 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01999
DMDM Disease mutations388406
Blocks (Seattle)LINC01999
Human Protein Atlas [tissue]ENSG00000267772-LINC01999 [tissue]
IPIIPI00745619   
Protein Interaction databases
FunCoupENSG00000267772
BioGRIDLINC01999
STRING (EMBL)LINC01999
ZODIACLINC01999
Ontologies - Pathways
Huge Navigator LINC01999 [HugePedia]
snp3D : Map Gene to Disease388406
BioCentury BCIQLINC01999
ClinGenLINC01999
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388406
Clinical trialLINC01999
Miscellaneous
canSAR (ICR)LINC01999 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01999
EVEXLINC01999
GoPubMedLINC01999
iHOPLINC01999
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:51 CET 2017

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