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LINC02000 (long intergenic non-protein coding RNA 2000)

Identity

Other alias-
HGNC (Hugo) LINC02000
LocusID (NCBI) 100507210
Atlas_Id 79949
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134055250 and ends at 134057648 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02000   52835
Cards
Entrez_Gene (NCBI)LINC02000  100507210  long intergenic non-protein coding RNA 2000
Aliases
GeneCards (Weizmann)LINC02000
Ensembl hg19 (Hinxton)ENSG00000243832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243832 [Gene_View]  ENSG00000243832 [Sequence]  chr3:134055250-134057648 [Contig_View]  LINC02000 [Vega]
ICGC DataPortalENSG00000243832
TCGA cBioPortalLINC02000
AceView (NCBI)LINC02000
Genatlas (Paris)LINC02000
WikiGenes100507210
SOURCE (Princeton)LINC02000
Genetics Home Reference (NIH)LINC02000
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02000  -     chr3:134055250-134057648 -  3q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02000  -     3q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02000 - 3q22.2 [CytoView hg19]  LINC02000 - 3q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC02000 [Mapview hg19]  LINC02000 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM083293
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02000
Cluster EST : UnigeneHs.669052 [ NCBI ]
CGAP (NCI)Hs.669052
Alternative Splicing GalleryENSG00000243832
Gene ExpressionLINC02000 [ NCBI-GEO ]   LINC02000 [ EBI - ARRAY_EXPRESS ]   LINC02000 [ SEEK ]   LINC02000 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02000 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507210
GTEX Portal (Tissue expression)LINC02000
Human Protein AtlasENSG00000243832-LINC02000 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02000
DMDM Disease mutations100507210
Blocks (Seattle)LINC02000
Human Protein Atlas [tissue]ENSG00000243832-LINC02000 [tissue]
Protein Interaction databases
FunCoupENSG00000243832
BioGRIDLINC02000
STRING (EMBL)LINC02000
ZODIACLINC02000
Ontologies - Pathways
Huge Navigator LINC02000 [HugePedia]
snp3D : Map Gene to Disease100507210
BioCentury BCIQLINC02000
ClinGenLINC02000
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507210
Clinical trialLINC02000
Miscellaneous
canSAR (ICR)LINC02000 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02000
EVEXLINC02000
GoPubMedLINC02000
iHOPLINC02000
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:39 CEST 2018

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