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LINC02004 (long intergenic non-protein coding RNA 2004)

Identity

Other alias-
HGNC (Hugo) LINC02004
LocusID (NCBI) 105374119
Atlas_Id 80110
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134313576 and ends at 134321171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02004   52838
Cards
Entrez_Gene (NCBI)LINC02004  105374119  long intergenic non-protein coding RNA 2004
Aliases
GeneCards (Weizmann)LINC02004
Ensembl hg19 (Hinxton)ENSG00000240006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240006 [Gene_View]  ENSG00000240006 [Sequence]  chr3:134313576-134321171 [Contig_View]  LINC02004 [Vega]
ICGC DataPortalENSG00000240006
TCGA cBioPortalLINC02004
AceView (NCBI)LINC02004
Genatlas (Paris)LINC02004
WikiGenes105374119
SOURCE (Princeton)LINC02004
Genetics Home Reference (NIH)LINC02004
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02004  -     chr3:134313576-134321171 +  3q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02004  -     3q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02004 - 3q22.2 [CytoView hg19]  LINC02004 - 3q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC02004 [Mapview hg19]  LINC02004 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02004
Alternative Splicing GalleryENSG00000240006
Gene ExpressionLINC02004 [ NCBI-GEO ]   LINC02004 [ EBI - ARRAY_EXPRESS ]   LINC02004 [ SEEK ]   LINC02004 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02004 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374119
GTEX Portal (Tissue expression)LINC02004
Human Protein AtlasENSG00000240006-LINC02004 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02004
DMDM Disease mutations105374119
Blocks (Seattle)LINC02004
Human Protein Atlas [tissue]ENSG00000240006-LINC02004 [tissue]
Protein Interaction databases
FunCoupENSG00000240006
BioGRIDLINC02004
STRING (EMBL)LINC02004
ZODIACLINC02004
Ontologies - Pathways
Huge Navigator LINC02004 [HugePedia]
snp3D : Map Gene to Disease105374119
BioCentury BCIQLINC02004
ClinGenLINC02004
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374119
Clinical trialLINC02004
Miscellaneous
canSAR (ICR)LINC02004 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02004
EVEXLINC02004
GoPubMedLINC02004
iHOPLINC02004
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:39 CEST 2018

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