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LINC02005 (long intergenic non-protein coding RNA 2005)

Identity

Other alias-
HGNC (Hugo) LINC02005
LocusID (NCBI) 105377165
Atlas_Id 79128
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 73809244 and ends at 73879620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02005   52839
Cards
Entrez_Gene (NCBI)LINC02005  105377165  long intergenic non-protein coding RNA 2005
Aliases
GeneCards (Weizmann)LINC02005
Ensembl hg19 (Hinxton)ENSG00000242741 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242741 [Gene_View]  ENSG00000242741 [Sequence]  chr3:73809244-73879620 [Contig_View]  LINC02005 [Vega]
ICGC DataPortalENSG00000242741
TCGA cBioPortalLINC02005
AceView (NCBI)LINC02005
Genatlas (Paris)LINC02005
WikiGenes105377165
SOURCE (Princeton)LINC02005
Genetics Home Reference (NIH)LINC02005
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02005  -     chr3:73809244-73879620 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02005  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblLINC02005 - 3p13 [CytoView hg19]  LINC02005 - 3p13 [CytoView hg38]
Mapping of homologs : NCBILINC02005 [Mapview hg19]  LINC02005 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02005
Alternative Splicing GalleryENSG00000242741
Gene ExpressionLINC02005 [ NCBI-GEO ]   LINC02005 [ EBI - ARRAY_EXPRESS ]   LINC02005 [ SEEK ]   LINC02005 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02005 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377165
GTEX Portal (Tissue expression)LINC02005
Human Protein AtlasENSG00000242741-LINC02005 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02005
DMDM Disease mutations105377165
Blocks (Seattle)LINC02005
Human Protein Atlas [tissue]ENSG00000242741-LINC02005 [tissue]
Protein Interaction databases
FunCoupENSG00000242741
BioGRIDLINC02005
STRING (EMBL)LINC02005
ZODIACLINC02005
Ontologies - Pathways
Huge Navigator LINC02005 [HugePedia]
snp3D : Map Gene to Disease105377165
BioCentury BCIQLINC02005
ClinGenLINC02005
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377165
Clinical trialLINC02005
Miscellaneous
canSAR (ICR)LINC02005 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02005
EVEXLINC02005
GoPubMedLINC02005
iHOPLINC02005
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:39 CEST 2018

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