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LINC02008 (long intergenic non-protein coding RNA 2008)

Identity

Other alias-
HGNC (Hugo) LINC02008
LocusID (NCBI) 105377180
Atlas_Id 78969
Location 3p12.2  [Link to chromosome band 3p12]
Location_base_pair Starts at 81986142 and ends at 82463675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02008   52844
Cards
Entrez_Gene (NCBI)LINC02008  105377180  long intergenic non-protein coding RNA 2008
Aliases
GeneCards (Weizmann)LINC02008
Ensembl hg19 (Hinxton)ENSG00000239440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239440 [Gene_View]  ENSG00000239440 [Sequence]  chr3:81986142-82463675 [Contig_View]  LINC02008 [Vega]
ICGC DataPortalENSG00000239440
TCGA cBioPortalLINC02008
AceView (NCBI)LINC02008
Genatlas (Paris)LINC02008
WikiGenes105377180
SOURCE (Princeton)LINC02008
Genetics Home Reference (NIH)LINC02008
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02008  -     chr3:81986142-82463675 +  3p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02008  -     3p12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02008 - 3p12.2 [CytoView hg19]  LINC02008 - 3p12.2 [CytoView hg38]
Mapping of homologs : NCBILINC02008 [Mapview hg19]  LINC02008 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031255
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02008
Cluster EST : UnigeneHs.531803 [ NCBI ]
CGAP (NCI)Hs.531803
Alternative Splicing GalleryENSG00000239440
Gene ExpressionLINC02008 [ NCBI-GEO ]   LINC02008 [ EBI - ARRAY_EXPRESS ]   LINC02008 [ SEEK ]   LINC02008 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02008 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377180
GTEX Portal (Tissue expression)LINC02008
Human Protein AtlasENSG00000239440-LINC02008 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02008
DMDM Disease mutations105377180
Blocks (Seattle)LINC02008
Human Protein Atlas [tissue]ENSG00000239440-LINC02008 [tissue]
Protein Interaction databases
FunCoupENSG00000239440
BioGRIDLINC02008
STRING (EMBL)LINC02008
ZODIACLINC02008
Ontologies - Pathways
Huge Navigator LINC02008 [HugePedia]
snp3D : Map Gene to Disease105377180
BioCentury BCIQLINC02008
ClinGenLINC02008
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377180
Clinical trialLINC02008
Miscellaneous
canSAR (ICR)LINC02008 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02008
EVEXLINC02008
GoPubMedLINC02008
iHOPLINC02008
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:40 CEST 2018

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