Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02012 (long intergenic non-protein coding RNA 2012)

Identity

Other alias-
HGNC (Hugo) LINC02012
LocusID (NCBI) 100129516
Atlas_Id 80160
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197505262 and ends at 197509661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02012   52847
Cards
Entrez_Gene (NCBI)LINC02012  100129516  long intergenic non-protein coding RNA 2012
Aliases
GeneCards (Weizmann)LINC02012
Ensembl hg19 (Hinxton)ENSG00000272989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272989 [Gene_View]  ENSG00000272989 [Sequence]  chr3:197505262-197509661 [Contig_View]  LINC02012 [Vega]
ICGC DataPortalENSG00000272989
TCGA cBioPortalLINC02012
AceView (NCBI)LINC02012
Genatlas (Paris)LINC02012
WikiGenes100129516
SOURCE (Princeton)LINC02012
Genetics Home Reference (NIH)LINC02012
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02012  -     chr3:197505262-197509661 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02012  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblLINC02012 - 3q29 [CytoView hg19]  LINC02012 - 3q29 [CytoView hg38]
Mapping of homologs : NCBILINC02012 [Mapview hg19]  LINC02012 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094447
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_187534
Consensus coding sequences : CCDS (NCBI)LINC02012
Cluster EST : UnigeneHs.635286 [ NCBI ]
CGAP (NCI)Hs.635286
Alternative Splicing GalleryENSG00000272989
Gene ExpressionLINC02012 [ NCBI-GEO ]   LINC02012 [ EBI - ARRAY_EXPRESS ]   LINC02012 [ SEEK ]   LINC02012 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02012 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129516
GTEX Portal (Tissue expression)LINC02012
Human Protein AtlasENSG00000272989-LINC02012 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02012
DMDM Disease mutations100129516
Blocks (Seattle)LINC02012
Human Protein Atlas [tissue]ENSG00000272989-LINC02012 [tissue]
IPIIPI00384843   
Protein Interaction databases
FunCoupENSG00000272989
BioGRIDLINC02012
STRING (EMBL)LINC02012
ZODIACLINC02012
Ontologies - Pathways
Huge Navigator LINC02012 [HugePedia]
snp3D : Map Gene to Disease100129516
BioCentury BCIQLINC02012
ClinGenLINC02012
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129516
Clinical trialLINC02012
Miscellaneous
canSAR (ICR)LINC02012 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02012
EVEXLINC02012
GoPubMedLINC02012
iHOPLINC02012
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:40 CEST 2018

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