Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02016 (long intergenic non-protein coding RNA 2016)

Identity

Other alias-
HGNC (Hugo) LINC02016
LocusID (NCBI) 101927123
Atlas_Id 79951
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 127322307 and ends at 127390670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02016   52851
Cards
Entrez_Gene (NCBI)LINC02016  101927123  long intergenic non-protein coding RNA 2016
Aliases
GeneCards (Weizmann)LINC02016
Ensembl hg19 (Hinxton)ENSG00000244215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244215 [Gene_View]  ENSG00000244215 [Sequence]  chr3:127322307-127390670 [Contig_View]  LINC02016 [Vega]
ICGC DataPortalENSG00000244215
TCGA cBioPortalLINC02016
AceView (NCBI)LINC02016
Genatlas (Paris)LINC02016
WikiGenes101927123
SOURCE (Princeton)LINC02016
Genetics Home Reference (NIH)LINC02016
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02016  -     chr3:127322307-127390670 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02016  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02016 - 3q21.3 [CytoView hg19]  LINC02016 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC02016 [Mapview hg19]  LINC02016 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC015846
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02016
Cluster EST : UnigeneHs.526761 [ NCBI ]
CGAP (NCI)Hs.526761
Alternative Splicing GalleryENSG00000244215
Gene ExpressionLINC02016 [ NCBI-GEO ]   LINC02016 [ EBI - ARRAY_EXPRESS ]   LINC02016 [ SEEK ]   LINC02016 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02016 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927123
GTEX Portal (Tissue expression)LINC02016
Human Protein AtlasENSG00000244215-LINC02016 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02016
DMDM Disease mutations101927123
Blocks (Seattle)LINC02016
Human Protein Atlas [tissue]ENSG00000244215-LINC02016 [tissue]
Protein Interaction databases
FunCoupENSG00000244215
BioGRIDLINC02016
STRING (EMBL)LINC02016
ZODIACLINC02016
Ontologies - Pathways
Huge Navigator LINC02016 [HugePedia]
snp3D : Map Gene to Disease101927123
BioCentury BCIQLINC02016
ClinGenLINC02016
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927123
Clinical trialLINC02016
Miscellaneous
canSAR (ICR)LINC02016 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02016
EVEXLINC02016
GoPubMedLINC02016
iHOPLINC02016
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:41 CEST 2018

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