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LINC02017 (long intergenic non-protein coding RNA 2017)

Identity

Other alias-
HGNC (Hugo) LINC02017
LocusID (NCBI) 105377096
Atlas_Id 80245
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 55178172 and ends at 55189214 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02017   52852
Cards
Entrez_Gene (NCBI)LINC02017  105377096  long intergenic non-protein coding RNA 2017
Aliases
GeneCards (Weizmann)LINC02017
Ensembl hg19 (Hinxton)ENSG00000243572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243572 [Gene_View]  ENSG00000243572 [Sequence]  chr3:55178172-55189214 [Contig_View]  LINC02017 [Vega]
ICGC DataPortalENSG00000243572
TCGA cBioPortalLINC02017
AceView (NCBI)LINC02017
Genatlas (Paris)LINC02017
WikiGenes105377096
SOURCE (Princeton)LINC02017
Genetics Home Reference (NIH)LINC02017
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02017  -     chr3:55178172-55189214 +  3p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02017  -     3p14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02017 - 3p14.3 [CytoView hg19]  LINC02017 - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBILINC02017 [Mapview hg19]  LINC02017 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR737705
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02017
Cluster EST : UnigeneHs.640507 [ NCBI ]
CGAP (NCI)Hs.640507
Alternative Splicing GalleryENSG00000243572
Gene ExpressionLINC02017 [ NCBI-GEO ]   LINC02017 [ EBI - ARRAY_EXPRESS ]   LINC02017 [ SEEK ]   LINC02017 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02017 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377096
GTEX Portal (Tissue expression)LINC02017
Human Protein AtlasENSG00000243572-LINC02017 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02017
DMDM Disease mutations105377096
Blocks (Seattle)LINC02017
Human Protein Atlas [tissue]ENSG00000243572-LINC02017 [tissue]
Protein Interaction databases
FunCoupENSG00000243572
BioGRIDLINC02017
STRING (EMBL)LINC02017
ZODIACLINC02017
Ontologies - Pathways
Huge Navigator LINC02017 [HugePedia]
snp3D : Map Gene to Disease105377096
BioCentury BCIQLINC02017
ClinGenLINC02017
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377096
Clinical trialLINC02017
Miscellaneous
canSAR (ICR)LINC02017 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02017
EVEXLINC02017
GoPubMedLINC02017
iHOPLINC02017
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:41 CEST 2018

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