Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02043 (long intergenic non-protein coding RNA 2043)

Identity

Other alias-
HGNC (Hugo) LINC02043
LocusID (NCBI) 102724699
Atlas_Id 78919
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 186810880 and ends at 186825521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02043   52883
Cards
Entrez_Gene (NCBI)LINC02043  102724699  long intergenic non-protein coding RNA 2043
Aliases
GeneCards (Weizmann)LINC02043
Ensembl hg19 (Hinxton)ENSG00000232233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232233 [Gene_View]  ENSG00000232233 [Sequence]  chr3:186810880-186825521 [Contig_View]  LINC02043 [Vega]
ICGC DataPortalENSG00000232233
TCGA cBioPortalLINC02043
AceView (NCBI)LINC02043
Genatlas (Paris)LINC02043
WikiGenes102724699
SOURCE (Princeton)LINC02043
Genetics Home Reference (NIH)LINC02043
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02043  -     chr3:186810880-186825521 -  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02043  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02043 - 3q27.3 [CytoView hg19]  LINC02043 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBILINC02043 [Mapview hg19]  LINC02043 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094454 BC028116
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02043
Cluster EST : UnigeneHs.679195 [ NCBI ]
CGAP (NCI)Hs.679195
Alternative Splicing GalleryENSG00000232233
Gene ExpressionLINC02043 [ NCBI-GEO ]   LINC02043 [ EBI - ARRAY_EXPRESS ]   LINC02043 [ SEEK ]   LINC02043 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02043 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724699
GTEX Portal (Tissue expression)LINC02043
Human Protein AtlasENSG00000232233-LINC02043 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02043
DMDM Disease mutations102724699
Blocks (Seattle)LINC02043
Human Protein Atlas [tissue]ENSG00000232233-LINC02043 [tissue]
Protein Interaction databases
FunCoupENSG00000232233
BioGRIDLINC02043
STRING (EMBL)LINC02043
ZODIACLINC02043
Ontologies - Pathways
Huge Navigator LINC02043 [HugePedia]
snp3D : Map Gene to Disease102724699
BioCentury BCIQLINC02043
ClinGenLINC02043
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724699
Clinical trialLINC02043
Miscellaneous
canSAR (ICR)LINC02043 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02043
EVEXLINC02043
GoPubMedLINC02043
iHOPLINC02043
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:45 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.