Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02046 (long intergenic non-protein coding RNA 2046)

Identity

Other alias-
HGNC (Hugo) LINC02046
LocusID (NCBI) 105374149
Atlas_Id 78867
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 148280891 and ends at 148399956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02046   52886
Cards
Entrez_Gene (NCBI)LINC02046  105374149  long intergenic non-protein coding RNA 2046
Aliases
GeneCards (Weizmann)LINC02046
Ensembl hg19 (Hinxton)ENSG00000242440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242440 [Gene_View]  ENSG00000242440 [Sequence]  chr3:148280891-148399956 [Contig_View]  LINC02046 [Vega]
ICGC DataPortalENSG00000242440
TCGA cBioPortalLINC02046
AceView (NCBI)LINC02046
Genatlas (Paris)LINC02046
WikiGenes105374149
SOURCE (Princeton)LINC02046
Genetics Home Reference (NIH)LINC02046
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02046  -     chr3:148280891-148399956 +  3q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02046  -     3q24   [Description]    (hg19-Feb_2009)
EnsemblLINC02046 - 3q24 [CytoView hg19]  LINC02046 - 3q24 [CytoView hg38]
Mapping of homologs : NCBILINC02046 [Mapview hg19]  LINC02046 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE041827 DB447863
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02046
Cluster EST : UnigeneHs.274837 [ NCBI ]
CGAP (NCI)Hs.274837
Alternative Splicing GalleryENSG00000242440
Gene ExpressionLINC02046 [ NCBI-GEO ]   LINC02046 [ EBI - ARRAY_EXPRESS ]   LINC02046 [ SEEK ]   LINC02046 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02046 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374149
GTEX Portal (Tissue expression)LINC02046
Human Protein AtlasENSG00000242440-LINC02046 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02046
DMDM Disease mutations105374149
Blocks (Seattle)LINC02046
Human Protein Atlas [tissue]ENSG00000242440-LINC02046 [tissue]
Protein Interaction databases
FunCoupENSG00000242440
BioGRIDLINC02046
STRING (EMBL)LINC02046
ZODIACLINC02046
Ontologies - Pathways
Huge Navigator LINC02046 [HugePedia]
snp3D : Map Gene to Disease105374149
BioCentury BCIQLINC02046
ClinGenLINC02046
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374149
Clinical trialLINC02046
Miscellaneous
canSAR (ICR)LINC02046 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02046
EVEXLINC02046
GoPubMedLINC02046
iHOPLINC02046
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:46 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.