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LINC02047 (long intergenic non-protein coding RNA 2047)

Identity

Other alias-
HGNC (Hugo) LINC02047
LocusID (NCBI) 101927346
Atlas_Id 79202
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 73999805 and ends at 74005609 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02047   52887
Cards
Entrez_Gene (NCBI)LINC02047  101927346  long intergenic non-protein coding RNA 2047
Aliases
GeneCards (Weizmann)LINC02047
Ensembl hg19 (Hinxton)ENSG00000239454 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239454 [Gene_View]  ENSG00000239454 [Sequence]  chr3:73999805-74005609 [Contig_View]  LINC02047 [Vega]
ICGC DataPortalENSG00000239454
TCGA cBioPortalLINC02047
AceView (NCBI)LINC02047
Genatlas (Paris)LINC02047
WikiGenes101927346
SOURCE (Princeton)LINC02047
Genetics Home Reference (NIH)LINC02047
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02047  -     chr3:73999805-74005609 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02047  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblLINC02047 - 3p13 [CytoView hg19]  LINC02047 - 3p13 [CytoView hg38]
Mapping of homologs : NCBILINC02047 [Mapview hg19]  LINC02047 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040672
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02047
Cluster EST : UnigeneHs.149040 [ NCBI ]
CGAP (NCI)Hs.149040
Alternative Splicing GalleryENSG00000239454
Gene ExpressionLINC02047 [ NCBI-GEO ]   LINC02047 [ EBI - ARRAY_EXPRESS ]   LINC02047 [ SEEK ]   LINC02047 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02047 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927346
GTEX Portal (Tissue expression)LINC02047
Human Protein AtlasENSG00000239454-LINC02047 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02047
DMDM Disease mutations101927346
Blocks (Seattle)LINC02047
Human Protein Atlas [tissue]ENSG00000239454-LINC02047 [tissue]
Protein Interaction databases
FunCoupENSG00000239454
BioGRIDLINC02047
STRING (EMBL)LINC02047
ZODIACLINC02047
Ontologies - Pathways
Huge Navigator LINC02047 [HugePedia]
snp3D : Map Gene to Disease101927346
BioCentury BCIQLINC02047
ClinGenLINC02047
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927346
Clinical trialLINC02047
Miscellaneous
canSAR (ICR)LINC02047 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02047
EVEXLINC02047
GoPubMedLINC02047
iHOPLINC02047
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:46 CEST 2018

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