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LINC02049 (long intergenic non-protein coding RNA 2049)

Identity

Other alias-
HGNC (Hugo) LINC02049
LocusID (NCBI) 101926983
Atlas_Id 80198
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 120812181 and ends at 120836357 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02049   52889
Cards
Entrez_Gene (NCBI)LINC02049  101926983  long intergenic non-protein coding RNA 2049
Aliases
GeneCards (Weizmann)LINC02049
Ensembl hg19 (Hinxton)ENSG00000243593 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243593 [Gene_View]  ENSG00000243593 [Sequence]  chr3:120812181-120836357 [Contig_View]  LINC02049 [Vega]
ICGC DataPortalENSG00000243593
TCGA cBioPortalLINC02049
AceView (NCBI)LINC02049
Genatlas (Paris)LINC02049
WikiGenes101926983
SOURCE (Princeton)LINC02049
Genetics Home Reference (NIH)LINC02049
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02049  -     chr3:120812181-120836357 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02049  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblLINC02049 - 3q13.33 [CytoView hg19]  LINC02049 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBILINC02049 [Mapview hg19]  LINC02049 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032918 BX108087
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02049
Cluster EST : UnigeneHs.555069 [ NCBI ]
CGAP (NCI)Hs.555069
Alternative Splicing GalleryENSG00000243593
Gene ExpressionLINC02049 [ NCBI-GEO ]   LINC02049 [ EBI - ARRAY_EXPRESS ]   LINC02049 [ SEEK ]   LINC02049 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02049 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101926983
GTEX Portal (Tissue expression)LINC02049
Human Protein AtlasENSG00000243593-LINC02049 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02049
DMDM Disease mutations101926983
Blocks (Seattle)LINC02049
Human Protein Atlas [tissue]ENSG00000243593-LINC02049 [tissue]
Protein Interaction databases
FunCoupENSG00000243593
BioGRIDLINC02049
STRING (EMBL)LINC02049
ZODIACLINC02049
Ontologies - Pathways
Huge Navigator LINC02049 [HugePedia]
snp3D : Map Gene to Disease101926983
BioCentury BCIQLINC02049
ClinGenLINC02049
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101926983
Clinical trialLINC02049
Miscellaneous
canSAR (ICR)LINC02049 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02049
EVEXLINC02049
GoPubMedLINC02049
iHOPLINC02049
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:46 CEST 2018

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