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LINC02050 (long intergenic non-protein coding RNA 2050)

Identity

Other alias-
HGNC (Hugo) LINC02050
LocusID (NCBI) 105377175
Atlas_Id 78880
Location 3p12.2  [Link to chromosome band 3p12]
Location_base_pair Starts at 80764897 and ends at 80789388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02050   52890
Cards
Entrez_Gene (NCBI)LINC02050  105377175  long intergenic non-protein coding RNA 2050
Aliases
GeneCards (Weizmann)LINC02050
Ensembl hg19 (Hinxton)ENSG00000242781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242781 [Gene_View]  ENSG00000242781 [Sequence]  chr3:80764897-80789388 [Contig_View]  LINC02050 [Vega]
ICGC DataPortalENSG00000242781
TCGA cBioPortalLINC02050
AceView (NCBI)LINC02050
Genatlas (Paris)LINC02050
WikiGenes105377175
SOURCE (Princeton)LINC02050
Genetics Home Reference (NIH)LINC02050
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02050  -     chr3:80764897-80789388 +  3p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02050  -     3p12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02050 - 3p12.2 [CytoView hg19]  LINC02050 - 3p12.2 [CytoView hg38]
Mapping of homologs : NCBILINC02050 [Mapview hg19]  LINC02050 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA405141 AA609332 BX116815 HY031244
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02050
Cluster EST : UnigeneHs.180696 [ NCBI ]
CGAP (NCI)Hs.180696
Alternative Splicing GalleryENSG00000242781
Gene ExpressionLINC02050 [ NCBI-GEO ]   LINC02050 [ EBI - ARRAY_EXPRESS ]   LINC02050 [ SEEK ]   LINC02050 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02050 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377175
GTEX Portal (Tissue expression)LINC02050
Human Protein AtlasENSG00000242781-LINC02050 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02050
DMDM Disease mutations105377175
Blocks (Seattle)LINC02050
Human Protein Atlas [tissue]ENSG00000242781-LINC02050 [tissue]
Protein Interaction databases
FunCoupENSG00000242781
BioGRIDLINC02050
STRING (EMBL)LINC02050
ZODIACLINC02050
Ontologies - Pathways
Huge Navigator LINC02050 [HugePedia]
snp3D : Map Gene to Disease105377175
BioCentury BCIQLINC02050
ClinGenLINC02050
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377175
Clinical trialLINC02050
Miscellaneous
canSAR (ICR)LINC02050 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02050
EVEXLINC02050
GoPubMedLINC02050
iHOPLINC02050
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:46 CEST 2018

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