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LINC02053 (long intergenic non-protein coding RNA 2053)

Identity

Other alias-
HGNC (Hugo) LINC02053
LocusID (NCBI) 100505609
Atlas_Id 79073
Location 3q26.33  [Link to chromosome band 3q26]
Location_base_pair Starts at 180414173 and ends at 180422501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02053   52893
Cards
Entrez_Gene (NCBI)LINC02053  100505609  long intergenic non-protein coding RNA 2053
Aliases
GeneCards (Weizmann)LINC02053
Ensembl hg19 (Hinxton)ENSG00000241696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241696 [Gene_View]  ENSG00000241696 [Sequence]  chr3:180414173-180422501 [Contig_View]  LINC02053 [Vega]
ICGC DataPortalENSG00000241696
TCGA cBioPortalLINC02053
AceView (NCBI)LINC02053
Genatlas (Paris)LINC02053
WikiGenes100505609
SOURCE (Princeton)LINC02053
Genetics Home Reference (NIH)LINC02053
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02053  -     chr3:180414173-180422501 +  3q26.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02053  -     3q26.33   [Description]    (hg19-Feb_2009)
EnsemblLINC02053 - 3q26.33 [CytoView hg19]  LINC02053 - 3q26.33 [CytoView hg38]
Mapping of homologs : NCBILINC02053 [Mapview hg19]  LINC02053 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA939063 BC041442 BI830672
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02053
Cluster EST : UnigeneHs.602436 [ NCBI ]
CGAP (NCI)Hs.602436
Alternative Splicing GalleryENSG00000241696
Gene ExpressionLINC02053 [ NCBI-GEO ]   LINC02053 [ EBI - ARRAY_EXPRESS ]   LINC02053 [ SEEK ]   LINC02053 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02053 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505609
GTEX Portal (Tissue expression)LINC02053
Human Protein AtlasENSG00000241696-LINC02053 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02053
DMDM Disease mutations100505609
Blocks (Seattle)LINC02053
Human Protein Atlas [tissue]ENSG00000241696-LINC02053 [tissue]
Protein Interaction databases
FunCoupENSG00000241696
BioGRIDLINC02053
STRING (EMBL)LINC02053
ZODIACLINC02053
Ontologies - Pathways
Huge Navigator LINC02053 [HugePedia]
snp3D : Map Gene to Disease100505609
BioCentury BCIQLINC02053
ClinGenLINC02053
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505609
Clinical trialLINC02053
Miscellaneous
canSAR (ICR)LINC02053 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02053
EVEXLINC02053
GoPubMedLINC02053
iHOPLINC02053
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:47 CEST 2018

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