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LINC02054 (long intergenic non-protein coding RNA 2054)

Identity

Other alias-
HGNC (Hugo) LINC02054
LocusID (NCBI) 105374250
Atlas_Id 80199
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184401537 and ends at 184439648 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02054   52894
Cards
Entrez_Gene (NCBI)LINC02054  105374250  long intergenic non-protein coding RNA 2054
Aliases
GeneCards (Weizmann)LINC02054
Ensembl hg19 (Hinxton)ENSG00000224153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224153 [Gene_View]  ENSG00000224153 [Sequence]  chr3:184401537-184439648 [Contig_View]  LINC02054 [Vega]
ICGC DataPortalENSG00000224153
TCGA cBioPortalLINC02054
AceView (NCBI)LINC02054
Genatlas (Paris)LINC02054
WikiGenes105374250
SOURCE (Princeton)LINC02054
Genetics Home Reference (NIH)LINC02054
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02054  -     chr3:184401537-184439648 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02054  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02054 - 3q27.1 [CytoView hg19]  LINC02054 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBILINC02054 [Mapview hg19]  LINC02054 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG190345 BX116842 DB090841 HY027726
RefSeq transcript (Entrez)NM_001322103 NM_001348206
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_187538
Consensus coding sequences : CCDS (NCBI)LINC02054
Cluster EST : UnigeneHs.722532 [ NCBI ]
CGAP (NCI)Hs.722532
Alternative Splicing GalleryENSG00000224153
Gene ExpressionLINC02054 [ NCBI-GEO ]   LINC02054 [ EBI - ARRAY_EXPRESS ]   LINC02054 [ SEEK ]   LINC02054 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02054 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374250
GTEX Portal (Tissue expression)LINC02054
Human Protein AtlasENSG00000224153-LINC02054 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02054
DMDM Disease mutations105374250
Blocks (Seattle)LINC02054
Human Protein Atlas [tissue]ENSG00000224153-LINC02054 [tissue]
Protein Interaction databases
FunCoupENSG00000224153
BioGRIDLINC02054
STRING (EMBL)LINC02054
ZODIACLINC02054
Ontologies - Pathways
Huge Navigator LINC02054 [HugePedia]
snp3D : Map Gene to Disease105374250
BioCentury BCIQLINC02054
ClinGenLINC02054
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374250
Clinical trialLINC02054
Miscellaneous
canSAR (ICR)LINC02054 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02054
EVEXLINC02054
GoPubMedLINC02054
iHOPLINC02054
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:47 CEST 2018

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