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LINC02078 (long intergenic non-protein coding RNA 2078)

Identity

Alias_symbol (synonym)HP09025
Other alias
HGNC (Hugo) LINC02078
LocusID (NCBI) 100652929
Atlas_Id 80000
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79707266 and ends at 79712317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02078   52926
Cards
Entrez_Gene (NCBI)LINC02078  100652929  long intergenic non-protein coding RNA 2078
AliasesHP09025
GeneCards (Weizmann)LINC02078
Ensembl hg19 (Hinxton)ENSG00000267719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267719 [Gene_View]  chr17:79707266-79712317 [Contig_View]  LINC02078 [Vega]
ICGC DataPortalENSG00000267719
TCGA cBioPortalLINC02078
AceView (NCBI)LINC02078
Genatlas (Paris)LINC02078
WikiGenes100652929
SOURCE (Princeton)LINC02078
Genetics Home Reference (NIH)LINC02078
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02078  -     chr17:79707266-79712317 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02078  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02078 - 17q25.3 [CytoView hg19]  LINC02078 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC02078 [Mapview hg19]  LINC02078 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593148 BC008248
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02078
Cluster EST : UnigeneHs.559249 [ NCBI ]
CGAP (NCI)Hs.559249
Alternative Splicing GalleryENSG00000267719
Gene ExpressionLINC02078 [ NCBI-GEO ]   LINC02078 [ EBI - ARRAY_EXPRESS ]   LINC02078 [ SEEK ]   LINC02078 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02078 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100652929
GTEX Portal (Tissue expression)LINC02078
Human Protein AtlasENSG00000267719-LINC02078 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02078
DMDM Disease mutations100652929
Blocks (Seattle)LINC02078
Human Protein Atlas [tissue]ENSG00000267719-LINC02078 [tissue]
Protein Interaction databases
FunCoupENSG00000267719
BioGRIDLINC02078
STRING (EMBL)LINC02078
ZODIACLINC02078
Ontologies - Pathways
Huge Navigator LINC02078 [HugePedia]
snp3D : Map Gene to Disease100652929
BioCentury BCIQLINC02078
ClinGenLINC02078
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652929
Clinical trialLINC02078
Miscellaneous
canSAR (ICR)LINC02078 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02078
EVEXLINC02078
GoPubMedLINC02078
iHOPLINC02078
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:52 CET 2017

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