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LINC02085 (long intergenic non-protein coding RNA 2085)

Identity

Other alias-
HGNC (Hugo) LINC02085
LocusID (NCBI) 152225
Atlas_Id 79889
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101940859 and ends at 101997926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02085   27190
Cards
Entrez_Gene (NCBI)LINC02085  152225  long intergenic non-protein coding RNA 2085
Aliases
GeneCards (Weizmann)LINC02085
Ensembl hg19 (Hinxton)ENSG00000214407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214407 [Gene_View]  ENSG00000214407 [Sequence]  chr3:101940859-101997926 [Contig_View]  LINC02085 [Vega]
ICGC DataPortalENSG00000214407
TCGA cBioPortalLINC02085
AceView (NCBI)LINC02085
Genatlas (Paris)LINC02085
WikiGenes152225
SOURCE (Princeton)LINC02085
Genetics Home Reference (NIH)LINC02085
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02085  -     chr3:101940859-101997926 +  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02085  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02085 - 3q12.3 [CytoView hg19]  LINC02085 - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBILINC02085 [Mapview hg19]  LINC02085 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090588 BC113576 BC113578 BC143890 BG249468
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02085
Cluster EST : UnigeneHs.376768 [ NCBI ]
CGAP (NCI)Hs.376768
Alternative Splicing GalleryENSG00000214407
Gene ExpressionLINC02085 [ NCBI-GEO ]   LINC02085 [ EBI - ARRAY_EXPRESS ]   LINC02085 [ SEEK ]   LINC02085 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02085 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152225
GTEX Portal (Tissue expression)LINC02085
Human Protein AtlasENSG00000214407-LINC02085 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VG73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VG73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VG73
Splice isoforms : SwissVarQ0VG73
PhosPhoSitePlusQ0VG73
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02085
DMDM Disease mutations152225
Blocks (Seattle)LINC02085
SuperfamilyQ0VG73
Human Protein Atlas [tissue]ENSG00000214407-LINC02085 [tissue]
Peptide AtlasQ0VG73
IPIIPI00784700   
Protein Interaction databases
DIP (DOE-UCLA)Q0VG73
IntAct (EBI)Q0VG73
FunCoupENSG00000214407
BioGRIDLINC02085
STRING (EMBL)LINC02085
ZODIACLINC02085
Ontologies - Pathways
QuickGOQ0VG73
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02085
Atlas of Cancer Signalling NetworkLINC02085
Wikipedia pathwaysLINC02085
Orthology - Evolution
OrthoDB152225
GeneTree (enSembl)ENSG00000214407
Phylogenetic Trees/Animal Genes : TreeFamLINC02085
HOVERGENQ0VG73
HOGENOMQ0VG73
Homologs : HomoloGeneLINC02085
Homology/Alignments : Family Browser (UCSC)LINC02085
Gene fusions - Rearrangements
Fusion : QuiverLINC02085
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02085 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02085
dbVarLINC02085
ClinVarLINC02085
1000_GenomesLINC02085 
Exome Variant ServerLINC02085
ExAC (Exome Aggregation Consortium)ENSG00000214407
GNOMAD BrowserENSG00000214407
Varsome BrowserLINC02085
Genetic variants : HAPMAP152225
Genomic Variants (DGV)LINC02085 [DGVbeta]
DECIPHERLINC02085 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02085 
Mutations
ICGC Data PortalLINC02085 
TCGA Data PortalLINC02085 
Broad Tumor PortalLINC02085
OASIS PortalLINC02085 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02085
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02085
DgiDB (Drug Gene Interaction Database)LINC02085
DoCM (Curated mutations)LINC02085 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02085 (select a term)
intoGenLINC02085
Cancer3DLINC02085(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC02085
MedgenLINC02085
Genetic Testing Registry LINC02085
NextProtQ0VG73 [Medical]
TSGene152225
GENETestsLINC02085
Target ValidationLINC02085
Huge Navigator LINC02085 [HugePedia]
snp3D : Map Gene to Disease152225
BioCentury BCIQLINC02085
ClinGenLINC02085
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152225
Clinical trialLINC02085
Miscellaneous
canSAR (ICR)LINC02085 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02085
EVEXLINC02085
GoPubMedLINC02085
iHOPLINC02085
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:52 CEST 2018

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