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LINC02107 (long intergenic non-protein coding RNA 2107)

Identity

Other alias-
HGNC (Hugo) LINC02107
LocusID (NCBI) 105374731
Atlas_Id 78839
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 38025697 and ends at 38183932 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02107   52962
Cards
Entrez_Gene (NCBI)LINC02107  105374731  long intergenic non-protein coding RNA 2107
Aliases
GeneCards (Weizmann)LINC02107
Ensembl hg19 (Hinxton)ENSG00000250003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250003 [Gene_View]  ENSG00000250003 [Sequence]  chr5:38025697-38183932 [Contig_View]  LINC02107 [Vega]
ICGC DataPortalENSG00000250003
TCGA cBioPortalLINC02107
AceView (NCBI)LINC02107
Genatlas (Paris)LINC02107
WikiGenes105374731
SOURCE (Princeton)LINC02107
Genetics Home Reference (NIH)LINC02107
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02107  -     chr5:38025697-38183932 +  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02107  -     5p13.2   [Description]    (hg19-Feb_2009)
LINC02107 - 5p13.2 [CytoView hg19]  LINC02107 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBILINC02107 [Mapview hg19]  LINC02107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI685284
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02107
Cluster EST : UnigeneHs.570981 [ NCBI ]
CGAP (NCI)Hs.570981
Alternative Splicing GalleryENSG00000250003
Gene ExpressionLINC02107 [ NCBI-GEO ]   LINC02107 [ EBI - ARRAY_EXPRESS ]   LINC02107 [ SEEK ]   LINC02107 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374731
GTEX Portal (Tissue expression)LINC02107
Human Protein AtlasENSG00000250003-LINC02107 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02107
DMDM Disease mutations105374731
Blocks (Seattle)LINC02107
Human Protein Atlas [tissue]ENSG00000250003-LINC02107 [tissue]
Protein Interaction databases
FunCoupENSG00000250003
BioGRIDLINC02107
STRING (EMBL)LINC02107
ZODIACLINC02107
Ontologies - Pathways
Huge Navigator LINC02107 [HugePedia]
snp3D : Map Gene to Disease105374731
BioCentury BCIQLINC02107
ClinGenLINC02107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374731
Clinical trialLINC02107
Miscellaneous
canSAR (ICR)LINC02107 (select the gene name)
DataMed IndexLINC02107
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02107
EVEXLINC02107
GoPubMedLINC02107
iHOPLINC02107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:48 CEST 2019

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