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LINC02108 (long intergenic non-protein coding RNA 2108)

Identity

Other alias-
HGNC (Hugo) LINC02108
LocusID (NCBI) 101928600
Atlas_Id 79990
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 58541567 and ends at 58558243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02108   52963
Cards
Entrez_Gene (NCBI)LINC02108  101928600  long intergenic non-protein coding RNA 2108
Aliases
GeneCards (Weizmann)LINC02108
Ensembl hg19 (Hinxton)ENSG00000250127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250127 [Gene_View]  ENSG00000250127 [Sequence]  chr5:58541567-58558243 [Contig_View]  LINC02108 [Vega]
ICGC DataPortalENSG00000250127
TCGA cBioPortalLINC02108
AceView (NCBI)LINC02108
Genatlas (Paris)LINC02108
WikiGenes101928600
SOURCE (Princeton)LINC02108
Genetics Home Reference (NIH)LINC02108
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02108  -     chr5:58541567-58558243 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02108  -     5q11.2   [Description]    (hg19-Feb_2009)
LINC02108 - 5q11.2 [CytoView hg19]  LINC02108 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBILINC02108 [Mapview hg19]  LINC02108 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK309731
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02108
Cluster EST : UnigeneHs.694699 [ NCBI ]
CGAP (NCI)Hs.694699
Alternative Splicing GalleryENSG00000250127
Gene ExpressionLINC02108 [ NCBI-GEO ]   LINC02108 [ EBI - ARRAY_EXPRESS ]   LINC02108 [ SEEK ]   LINC02108 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02108 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928600
GTEX Portal (Tissue expression)LINC02108
Human Protein AtlasENSG00000250127-LINC02108 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02108
DMDM Disease mutations101928600
Blocks (Seattle)LINC02108
Human Protein Atlas [tissue]ENSG00000250127-LINC02108 [tissue]
Protein Interaction databases
FunCoupENSG00000250127
BioGRIDLINC02108
STRING (EMBL)LINC02108
ZODIACLINC02108
Ontologies - Pathways
Huge Navigator LINC02108 [HugePedia]
snp3D : Map Gene to Disease101928600
BioCentury BCIQLINC02108
ClinGenLINC02108
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928600
Clinical trialLINC02108
Miscellaneous
canSAR (ICR)LINC02108 (select the gene name)
DataMed IndexLINC02108
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02108
EVEXLINC02108
GoPubMedLINC02108
iHOPLINC02108
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:49 CEST 2019

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