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LINC02109 (long intergenic non-protein coding RNA 2109)

Identity

Other alias-
HGNC (Hugo) LINC02109
LocusID (NCBI) 101929660
Atlas_Id 79829
Location 5p13.3  [Link to chromosome band 5p13]
Location_base_pair Starts at 29143503 and ends at 29172976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02109   52964
Cards
Entrez_Gene (NCBI)LINC02109  101929660  long intergenic non-protein coding RNA 2109
Aliases
GeneCards (Weizmann)LINC02109
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:29143503-29172976 [Contig_View]  LINC02109 [Vega]
TCGA cBioPortalLINC02109
AceView (NCBI)LINC02109
Genatlas (Paris)LINC02109
WikiGenes101929660
SOURCE (Princeton)LINC02109
Genetics Home Reference (NIH)LINC02109
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02109  -     chr5:29143503-29172976 +  5p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02109  -     5p13.3   [Description]    (hg19-Feb_2009)
LINC02109 - 5p13.3 [CytoView hg19]  LINC02109 - 5p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC02109 [Mapview hg19]  LINC02109 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098570 BQ011117 BX100840 DB048096 HY211101
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02109
Cluster EST : UnigeneHs.171348 [ NCBI ]
CGAP (NCI)Hs.171348
Gene ExpressionLINC02109 [ NCBI-GEO ]   LINC02109 [ EBI - ARRAY_EXPRESS ]   LINC02109 [ SEEK ]   LINC02109 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02109 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929660
GTEX Portal (Tissue expression)LINC02109
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02109
DMDM Disease mutations101929660
Blocks (Seattle)LINC02109
Protein Interaction databases
BioGRIDLINC02109
STRING (EMBL)LINC02109
ZODIACLINC02109
Ontologies - Pathways
Huge Navigator LINC02109 [HugePedia]
snp3D : Map Gene to Disease101929660
BioCentury BCIQLINC02109
ClinGenLINC02109
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929660
Clinical trialLINC02109
Miscellaneous
canSAR (ICR)LINC02109 (select the gene name)
DataMed IndexLINC02109
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02109
EVEXLINC02109
GoPubMedLINC02109
iHOPLINC02109
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:49 CEST 2019

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