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LINC02111 (long intergenic non-protein coding RNA 2111)

Identity

Other alias-
HGNC (Hugo) LINC02111
LocusID (NCBI) 401177
Atlas_Id 79673
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 17378906 and ends at 17387310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02111   52966
Cards
Entrez_Gene (NCBI)LINC02111  401177  long intergenic non-protein coding RNA 2111
Aliases
GeneCards (Weizmann)LINC02111
Ensembl hg19 (Hinxton)ENSG00000250822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250822 [Gene_View]  ENSG00000250822 [Sequence]  chr5:17378906-17387310 [Contig_View]  LINC02111 [Vega]
ICGC DataPortalENSG00000250822
TCGA cBioPortalLINC02111
AceView (NCBI)LINC02111
Genatlas (Paris)LINC02111
WikiGenes401177
SOURCE (Princeton)LINC02111
Genetics Home Reference (NIH)LINC02111
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02111  -     chr5:17378906-17387310 -  5p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02111  -     5p15.1   [Description]    (hg19-Feb_2009)
LINC02111 - 5p15.1 [CytoView hg19]  LINC02111 - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBILINC02111 [Mapview hg19]  LINC02111 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC052942
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02111
Cluster EST : UnigeneHs.508311 [ NCBI ]
CGAP (NCI)Hs.508311
Alternative Splicing GalleryENSG00000250822
Gene ExpressionLINC02111 [ NCBI-GEO ]   LINC02111 [ EBI - ARRAY_EXPRESS ]   LINC02111 [ SEEK ]   LINC02111 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02111 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401177
GTEX Portal (Tissue expression)LINC02111
Human Protein AtlasENSG00000250822-LINC02111 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02111
DMDM Disease mutations401177
Blocks (Seattle)LINC02111
Human Protein Atlas [tissue]ENSG00000250822-LINC02111 [tissue]
Protein Interaction databases
FunCoupENSG00000250822
BioGRIDLINC02111
STRING (EMBL)LINC02111
ZODIACLINC02111
Ontologies - Pathways
Huge Navigator LINC02111 [HugePedia]
snp3D : Map Gene to Disease401177
BioCentury BCIQLINC02111
ClinGenLINC02111
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401177
Clinical trialLINC02111
Miscellaneous
canSAR (ICR)LINC02111 (select the gene name)
DataMed IndexLINC02111
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02111
EVEXLINC02111
GoPubMedLINC02111
iHOPLINC02111
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:49 CEST 2019

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