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LINC02113 (long intergenic non-protein coding RNA 2113)

Identity

Other aliasCTD-2151A2.1
HGNC (Hugo) LINC02113
LocusID (NCBI) 102724855
Atlas_Id 79106
Location 5q21.1  [Link to chromosome band 5q21]
Location_base_pair Starts at 99533990 and ends at 99577954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02113   52967
Cards
Entrez_Gene (NCBI)LINC02113  102724855  long intergenic non-protein coding RNA 2113
AliasesCTD-2151A2.1
GeneCards (Weizmann)LINC02113
Ensembl hg19 (Hinxton)ENSG00000249515 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249515 [Gene_View]  ENSG00000249515 [Sequence]  chr5:99533990-99577954 [Contig_View]  LINC02113 [Vega]
ICGC DataPortalENSG00000249515
TCGA cBioPortalLINC02113
AceView (NCBI)LINC02113
Genatlas (Paris)LINC02113
WikiGenes102724855
SOURCE (Princeton)LINC02113
Genetics Home Reference (NIH)LINC02113
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02113  -     chr5:99533990-99577954 +  5q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02113  -     5q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02113 - 5q21.1 [CytoView hg19]  LINC02113 - 5q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC02113 [Mapview hg19]  LINC02113 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA897643 CR742340
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02113
Cluster EST : UnigeneHs.519477 [ NCBI ]
CGAP (NCI)Hs.519477
Alternative Splicing GalleryENSG00000249515
Gene ExpressionLINC02113 [ NCBI-GEO ]   LINC02113 [ EBI - ARRAY_EXPRESS ]   LINC02113 [ SEEK ]   LINC02113 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02113 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724855
GTEX Portal (Tissue expression)LINC02113
Human Protein AtlasENSG00000249515-LINC02113 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02113
DMDM Disease mutations102724855
Blocks (Seattle)LINC02113
Human Protein Atlas [tissue]ENSG00000249515-LINC02113 [tissue]
Protein Interaction databases
FunCoupENSG00000249515
BioGRIDLINC02113
STRING (EMBL)LINC02113
ZODIACLINC02113
Ontologies - Pathways
Huge Navigator LINC02113 [HugePedia]
snp3D : Map Gene to Disease102724855
BioCentury BCIQLINC02113
ClinGenLINC02113
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724855
Clinical trialLINC02113
Miscellaneous
canSAR (ICR)LINC02113 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02113
EVEXLINC02113
GoPubMedLINC02113
iHOPLINC02113
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:57 CEST 2018

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